DR405983

Overview
NameDR405983
Unique NameDR405983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.174e-56
Identity = 103/138 (74.64%), Postives = 123/138 (89.13%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            MAN++SGMAV D+CKLKF+ELKAKR +RFIVFKIEEK +QV VE+LG+P ++Y+DFT  LP  ECRYAV+D+DFVT ENCQKS+IFFI+ SPDT+RVRSKM+YA +KDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:    1 MANSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECLPPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.174e-56
Identity = 105/138 (76.09%), Postives = 122/138 (88.41%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            MANAASGMAV D+CKLKFLELK+KR YRFI+F+I+ +Q  V+VEKLG P +TY+DFTASLPA ECRYAV+D+DF+T ENCQKS+IFFIA SPD++RVR KM+YA SKDRFKRELDGIQVELQATDPSEM  D+ K RA
Sbjct:    1 MANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQ--VVVEKLGNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 4.174e-56
Identity = 102/138 (73.91%), Postives = 125/138 (90.58%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            MAN+ASGMAV D+CKLKF ELK+KR++RFI FKI+E+ +QV+V++LG+P  TY+DFTAS+PA ECRYAV+D+DFVT ENCQKS+IFFI+ SPDT++VRSKM+YA SKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:    1 MANSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 5.103e-54
Identity = 104/138 (75.36%), Postives = 118/138 (85.51%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            MANAASGMAV D+CKLKFLELKAKR YRFI+F+I+ +Q  V+VEKLG P + Y+DFT  LP  ECRYAVYD+DF TAEN QKS+IFFIA SPD++RVR KM+YA SKDRFKRELDGIQVELQATDPSEM LD+ K RA
Sbjct:    1 MANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQ--VVVEKLGSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.800e-52
Identity = 94/139 (67.63%), Postives = 118/139 (84.89%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            MAN++SG+AV D+CK+KF +LKA+R++RFIVF+I++K  ++ V++LGEP Q Y DFT SLPA+ECRYA+YD DF T ENCQKS+IFF + SPDTAR RSKM+YA SKDRF+RELDGIQ E+QATDPSEM LD+ K R N
Sbjct:    1 MANSSSGLAVSDECKVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.390e-51
Identity = 95/139 (68.35%), Postives = 118/139 (84.89%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            MAN+ASG+AV+D+CK KF ELK +R +RFIVFKI++K  ++ VE+LG+  + YEDF A+LPA+ECRYAVYD DFVT ENCQKS+IFF + SPDTAR RSKM+YA SKDRF+RELDGIQ E+QATDPSEM LD+ + RA+
Sbjct:    1 MANSASGLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH 139          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.390e-51
Identity = 93/139 (66.91%), Postives = 117/139 (84.17%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            MAN++SG+AV+D+CK+KF ELK++RT+RFIVF+I++   ++ V++LGEP Q Y DFT SLPA ECRYA+YD DF T ENCQKS+IFF + SPDTAR RSKM+YA SKDRF+RELDGIQ E+QATDPSEM LD+ + R N
Sbjct:    1 MANSSSGLAVNDECKVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.878e-48
Identity = 94/127 (74.02%), Postives = 111/127 (87.40%), Query Frame = 1
Query:  238 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            D+CKLKFLELK KR +RFI+F+I+ +Q  V+VEKLG P +TY+DFTASLPA+ECRYAV+D+DF T ENCQKS+IFFIA SPD++RVR KM+YA SKDRFKRELDGIQVELQATDPSEM  D+ K RA
Sbjct:    2 DNCKLKFLELK-KRIFRFIIFRIDGQQ--VVVEKLGNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.041e-47
Identity = 83/137 (60.58%), Postives = 117/137 (85.40%), Query Frame = 1
Query:  211 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            NA+SGM V D  K  FLELK K+ +R+++FKI+EK+K+V+VEK G P +++++F A+LP  +CRYAVYD+DFVT+ENCQKS+IFFIA SPD++R+R+KM+YA SK+RF+RELDG+  E+QATDP+EM L+V ++RA+
Sbjct:    7 NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.998e-46
Identity = 84/137 (61.31%), Postives = 115/137 (83.94%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 615
            MAN++SG+A+HDDCKLKF EL++KR +RFI F ++ K K++IV+K+G+ T +YEDFT+SLP  +CR+A+YD+DF+TAE+  KSRIF+I  SPD A+VRSKM+YA S +RFK+EL+GIQ+E+QATD  E+ LD  KDR
Sbjct:    1 MANSSSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
The following BLAST results are available for this feature:
BLAST of DR405983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ADF_LILLO4.174e-5674.64Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF7_ARATH4.174e-5676.09Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF6_ORYSJ4.174e-5673.91Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF12_ARATH5.103e-5475.36Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF2_MAIZE2.800e-5267.63Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF9_ORYSJ1.390e-5168.35Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF1_MAIZE1.390e-5166.91Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF_BRANA1.878e-4874.02Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF_VITVI6.041e-4760.58Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF4_ORYSJ2.998e-4661.31Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248G02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405983 ID=DR405983; Name=DR405983; organism=Citrus sinensis; type=EST; length=734bp
GGGGAGTCACCAGTCAGATTTTTCATAATATTAAAAAAGCAAAGCAAAAA
GAAAATTTGAGAAAAAAAACCAGAATAAAAACAATATAAAACAAGTAGAA
GAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTTCCT
TCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGA
AACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGC
TAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTT
AAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCC
AACTCAAACCTATGAAGATTTTACTGCCAGCCTTCCTGCTGAGGAGTGCC
GATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAA
AGCAGGATTTTCTTCATTGCATGATCTCCCGACACTGCAAGAGTAAGAAG
CAAGATGATTTATGCGGGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATG
GCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGAC
GTATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTG
AGATTGGTTTTTATCTTTTGTGCTTTACCTAAAGGTGANNNNNNANNAGT
TTGTGGCGGCAGCTTGAATCTAACTGAATTATGA
back to top