DR405983

Overview
NameDR405983
Unique NameDR405983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 51/128 (39.84%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  220 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLD 600
            SG+AV D+    F +LK  + Y+FI++ + + + ++IV++     Q Y+ F   LP  +C YAVYD+++    N  ++S+I F   SPDTA VRSKM+YA SKD  +R L+G+  ++Q TD SE+  +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 50/135 (37.04%), Postives = 85/135 (62.96%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDF-VTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            +SG+    +C  KF ELK  +   ++++ + E ++ ++V K  E  + ++ F A LP ++CR+AVYD++F +      ++++ FI  SPD A V++KMI+A SK+  +R LDGI  E+QATD SE+  D   ++A
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASED-KDFDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.691e-20
Identity = 48/128 (37.50%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  220 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAE-NCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLD 600
            SG+AV D+    F +LK  + ++ I++K+ + + +++V+        Y+ F   LP  +CRYAVYD+++   + + ++++I F   SPDTA VR+KM+YA SKD  +R L+GI  E+Q TD SE+  +
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTSTE-DAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYE 130          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 48/128 (37.50%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  220 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDF-VTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLD 600
            SG+AV D+    F +LK  + Y+F++F +   +  +IV++     + Y+ F   LP ++C YAVYD+++ ++    ++S+I F   SPDTA +RSKM+YA SKD  +R L+G+  ++Q TD SE+  +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNE-RDYDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 47/141 (33.33%), Postives = 86/141 (60.99%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPA---EECRYAVYDYDFV-----TAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 615
            ASG+ V D CK  + E+K  + +R+++F I + +KQ+ VE + +    Y+ F   +      ECRY ++D++++     T+E+ +K ++F ++  PDTA+V+ KM+Y+ S D  K+ L G+Q  +QATD SE   +  +++
Sbjct:    2 ASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRD-EKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEK 141          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  241 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEEC-----------RYAVYDYDFVTAENCQ-KSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLD 600
            DC   F +LK  + Y+FIV+K+ +  K+++++K  E ++ +EDF  +L                RYAVYD+++  A     +++I FIA SPD A ++ KMIYA SK+  KR L GI  ELQA D  ++  D
Sbjct:    2 DCITAFNDLKLNKKYKFIVYKLSDDYKEIVIDKASE-SRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYD 132          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            ASG+ V+D+    F ++K          K+  + ++F + + +KQ+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI  +P++A ++SKMIYA SKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF2_XENLA (Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 54/151 (35.76%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK--------LGEPTQT-YEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 615
            ASG+ V+D+    F E+K          K+  + ++F +   +K++IVE+        +GE  Q  Y  F   LP ++CRY +YD  + T E+ +K  + FI  +PD A ++SKMIYA SKD  K++  GI+ E Q       GLD  KDR
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVQDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 51/137 (37.23%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQA 573
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI  +P++A ++SKMIYA SKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 51/137 (37.23%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQA 573
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI  +P++A ++SKMIYA SKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
The following BLAST results are available for this feature:
BLAST of DR405983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
COFI_KLULA9.713e-2139.84Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_CRYNE1.657e-2037.04Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COFI_PICAN3.691e-2037.50Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_ASHGO6.296e-2037.50Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
CADF_DROME9.091e-1933.33Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COFI_GIBZE8.509e-1737.88Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF2_CHICK1.040e-1435.53Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF2_XENLA1.358e-1435.76Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1[more]
COF1_RAT1.774e-1437.23Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN1.774e-1437.23Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248G02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405983 ID=DR405983; Name=DR405983; organism=Citrus sinensis; type=EST; length=734bp
GGGGAGTCACCAGTCAGATTTTTCATAATATTAAAAAAGCAAAGCAAAAA
GAAAATTTGAGAAAAAAAACCAGAATAAAAACAATATAAAACAAGTAGAA
GAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTTCCT
TCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGA
AACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGC
TAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTT
AAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCC
AACTCAAACCTATGAAGATTTTACTGCCAGCCTTCCTGCTGAGGAGTGCC
GATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAA
AGCAGGATTTTCTTCATTGCATGATCTCCCGACACTGCAAGAGTAAGAAG
CAAGATGATTTATGCGGGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATG
GCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGAC
GTATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTG
AGATTGGTTTTTATCTTTTGTGCTTTACCTAAAGGTGANNNNNNANNAGT
TTGTGGCGGCAGCTTGAATCTAACTGAATTATGA
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