DR405946

Overview
NameDR405946
Unique NameDR405946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:2..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.725e-31
Identity = 62/130 (47.69%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  231 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            V +  K  F EL  ++ +R+++FKI++++++++VEK G P ++Y+DFTASLPA+    AVYD DFV+ +NC+KS+IFFI+ SP  + +R+K IYA  +++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.711e-30
Identity = 62/133 (46.62%), Postives = 91/133 (68.42%), Query Frame = 3
Query:  219 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 617
            SG+AV DDC  KF ELK    +R++ FK+     +V+VE +G P  TYEDF + LP  +CRYA++DY+F   +  Q+++I FI  +PD+A ++SKM+Y  +KD  K++L GIQVE+QATD +E+  D   +RA
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 57/135 (42.22%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  219 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDF-VTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            SG+AV+D     F ELK  +   FI++KI + + +++VE+ G  T +Y+ F   LP  +CRYAVYD+++ +++   ++S++ F   SPDTA VRSKMIYA SKD  +R L GI  E+Q TD SE+  +   +R +
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEGT-TDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 49/135 (36.30%), Postives = 86/135 (63.70%), Query Frame = 3
Query:  216 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            +SG+ V  +C  KF ELK  +  ++I++ + +K  +++V+     T +Y+DF A LP  ECRYA+YD+++   +  ++++I F + SPD A+++ KM++A SKD  ++ L GI  E+Q TD SE+  D   D+ +
Sbjct:    2 SSGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTSTST-SYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.943e-22
Identity = 51/135 (37.78%), Postives = 86/135 (63.70%), Query Frame = 3
Query:  219 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDF-VTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            SG+AV D+    F +LK  + Y+FI+F + +++ +++VE+    +  Y+ F   LP  EC+YA+YD+++ +     ++S+I F   SPDTA ++SKMIYA SKD  +R L+G+  ++Q TD SE+  +   DR +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 3
Query:  219 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            SG++V D+    F +LK  + Y+F+++ I E  K  IV K    +Q+Y++F   LP  +C YA+YD+++    N  ++S+I F   SPDTA VRSKM+YA SKD  +R L G+  ++Q TD SE+  +   +R +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISE-DKTTIVVKETSTSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 49/132 (37.12%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  219 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 614
            SG+ V  +C   F ELK  ++ R++VFK+ + + +++VEK     + ++ F   LP ++CRYA+YD++F   E   +++I FI+ SPD A ++SKM+Y+ SKD  +R   GI  ++QATD SE+  +   ++
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTD-KDFDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEK 133          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 50/135 (37.04%), Postives = 84/135 (62.22%), Query Frame = 3
Query:  219 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDF-VTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            SG+AV D+    F +LK  + Y+FI+F + + + +++V++      +Y+ F   LP  +C YA+YD+++ +     ++S+I F   SPDTA VRSKM+YA SKD  +R L+G+  ++Q TD SE+  D   +R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 50/135 (37.04%), Postives = 85/135 (62.96%), Query Frame = 3
Query:  219 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 620
            SG+AV D+    F +LK    Y+F++F + + + +++V++      +Y+ F   LP  +C YAVYD+++  +E+  ++S+I F   SPDTA VR KM+YA SKD  KR L+G+ +E+Q TD SE+  +   ++ +
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 52/133 (39.10%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  216 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 614
            +SG+A+  +C   F +LK  R Y  I+++I +  K++IV+       ++++FT  LP  ECRY V DY +   E  QKS+I F+A  PDTA ++ KM+   SKD  ++   GIQVE+Q TD SE+    F ++
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEVKDSCFYEK 133          
The following BLAST results are available for this feature:
BLAST of DR405946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ADF8_ORYSJ2.725e-3147.69Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ACTP_ACACA6.711e-3046.62Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI5.502e-2442.22Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_USTMA1.601e-2336.30Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_DEBHA3.943e-2237.78Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_ZYGRO1.957e-2139.26Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_SCHPO2.556e-2137.12Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_YEAST3.338e-2137.04Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_CANGA4.360e-2137.04Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COF1_DICDI5.694e-2139.10Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248E06 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405946 ID=DR405946; Name=DR405946; organism=Citrus sinensis; type=EST; length=734bp
GGGAGTCACCAGTCAGATTTTTCATAATATTAANNNAGCAAAGCAAAAAG
AAAATTTGAGAAAAAAAACCAGAATAAAAACAATATAAAACAAGTAGAAG
AGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTTCCTT
CACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGAA
ACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGCT
AAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTTA
AGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCA
ACTCAAACCTATGAAGATTTTACTGCCAGCCTTCCTGCTGAGGAGTGCCG
ATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAAA
GCAGGATTTTCTTCATTGCATGATCTCCCGACACTGCAAGAGTAAGAAGC
AAGATGATTTATGCGGGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGG
CATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACG
TATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTGA
GATTGTTTTTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAGTTT
GTGGCGGCAGCTTGAATCTAACTGAATTATGATA
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