DR405946

Overview
NameDR405946
Unique NameDR405946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:2..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 33/129 (25.58%), Postives = 75/129 (58.14%), Query Frame = 3 
Query:  228 AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 614
            +++D+   K+ EL      + I+ K  +  K+V+ E      +++ED+    P ++CRY VYD+ ++  +  +K++IFFI+  P   ++++K+++  ++    ++L GI   ++ATD +E+   + ++R
Sbjct:    6 SINDEVITKYNELILGHISKGIIIKFSDDFKEVVFEDSFNG-ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEER 133
[Close]
BLAST of DR405946 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 3 
Query:  216 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQ 569
            ASG+ V DD    F ++K         AK+  + ++F + + +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+  +P+ A ++SKMIYA SKD  ++   GI+ E Q
Sbjct:    2 ASGVMVSDDVVKVFNDMKVRHQLSPEEAKKRKKAVIFCLSDDKKTIILEPGKEILQGDVGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136
The following BLAST results are available for this feature:
BLAST of DR405946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
COF4_DICDI6.310e-1225.58Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
COF1B_XENLA1.836e-1133.09Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248E06 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405946 ID=DR405946; Name=DR405946; organism=Citrus sinensis; type=EST; length=734bp
GGGAGTCACCAGTCAGATTTTTCATAATATTAANNNAGCAAAGCAAAAAG
AAAATTTGAGAAAAAAAACCAGAATAAAAACAATATAAAACAAGTAGAAG
AGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTTCCTT
CACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGAA
ACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGCT
AAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTTA
AGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCA
ACTCAAACCTATGAAGATTTTACTGCCAGCCTTCCTGCTGAGGAGTGCCG
ATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAAA
GCAGGATTTTCTTCATTGCATGATCTCCCGACACTGCAAGAGTAAGAAGC
AAGATGATTTATGCGGGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGG
CATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACG
TATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTGA
GATTGTTTTTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAGTTT
GTGGCGGCAGCTTGAATCTAACTGAATTATGATA
back to top