DR405938

Overview
NameDR405938
Unique NameDR405938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  152 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKQYW 475
            K YT++E   H      W+++H+KVYD+T +L++HPGG++V+      DAT+ FED GHS DAREL +++ IGEL          + S   +PSD  +        +W
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPD-------DRSKIAKPSDTLITTVESNSSWW 110          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  152 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKQYWAAPVAVVGISVMVGFLCLR 532
            K YT++E   H      W+++H+KVYD+T +L++HPGG++V+      DAT+ FED GHS DAREL +++ IGEL          + S   +PS+  +        +W   V +  IS +V  L  R
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPD-------DRSKIAKPSETLITTVESNSSWWTNWV-IPAISALVVALMYR 128          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  137 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 385
            M T SK YTM E   HN  D  WI+VH  VYD T +L DHPGG D +L     D T+EFE A HS  A+++LE + IGEL T+
Sbjct:  513 MNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFE-AIHSDKAKQMLEDYRIGELTTT 594          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  137 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSS-PLIPELEISSKRQPSDFALKLKNLTKQ 469
            M T SK+Y++ E   HNT D  WI+VH  +YD T +L DHPGG D +L     D T+EFE A HS  A++LLE + IGEL T+     P + +            +K LT Q
Sbjct:  541 MNTASKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFE-AIHSDKAKKLLEDYRIGELITTGYDSSPNVSVHGASNFGPLLAPIKELTPQ 651          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 37/96 (38.54%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  146 LSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPS 433
            + K+Y+ QE A HN  ++ WI++ +KVYDV+ + D+HPGGD++++    +DAT+ F D GHS +A  LL+   IG++D +S  +   ++S+    S
Sbjct:    1 MPKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTSERVSVEKVSTSENQS 96          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  137 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 385
            M T SK+Y+M E   H++ D  WI+VH  +YD T +L DHPGG D +L     D T+EF DA HS  A++LLE F IGEL T+
Sbjct:  527 MNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGTDSILINAGTDCTEEF-DAIHSDKAKKLLEDFRIGELITT 608          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  137 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 385
            M T SK+Y+M E   H++ D  WI+VH  +YD T +L DHPGG D +L     D T+EF DA HS  A++LLE F IGEL T+
Sbjct:  527 MNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEF-DAIHSDKAKKLLEEFRIGELLTT 608          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  137 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 385
            M T SK YTM E   HN  D  WI+VH  VYD T +L DHPGG D +L     D T+EFE A HS  A+++LE + IGEL T+
Sbjct:  509 MNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDWTRFLKDHPGGTDRILINAGTDCTEEFE-AIHSDKAKQMLEDYRIGELTTT 590          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   95 EREGERLTKSPPIK--------MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 385
            ER+ E+ ++S P          M T SK+Y+M E   HN+ +  WI+VH  +YD T +L DHPGG D +L     D T+EFE A HS  A++LLE + IGEL T+
Sbjct:  513 ERQIEKSSESHPTLKKSVSTPFMNTASKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFE-AIHSDKAKKLLEDYRIGELITT 616          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   71 VRISENLVEREGERLTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDT 382
            + IS  L     ++   SP   M T S  +TM E   HN+ D  WIVVH  +YD TS+L DHPGG D +L     D T+EF DA HS  A++LLE + +GEL T
Sbjct:  510 LEISSELAHPTLKKSVSSP--FMNTTSLTFTMSEVKKHNSADSAWIVVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEF-DAIHSDKAKKLLEEYRVGELIT 610          
The following BLAST results are available for this feature:
BLAST of DR405938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYB5_MOUSE1.217e-1737.96Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB5_RAT1.589e-1736.22Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
NIA2_SOYBN2.711e-1751.81Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA1_ARATH2.711e-1741.96Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
CYB5_YEAST2.711e-1738.54Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
NIA2_TOBAC6.039e-1750.60Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA1_TOBAC6.039e-1750.60Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA1_SOYBN6.039e-1751.81Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA1_BRANA7.887e-1743.81Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA_CICIN1.030e-1645.19Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248D21 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248D21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405938 ID=DR405938; Name=DR405938; organism=Citrus sinensis; type=EST; length=701bp
GGGGTTTAACCCGAGAGACAGAAAACGGGCCTGAGATGCCAAATCCCAAT
TCTCGAGCACAGGGTTGAAGGTGAGGATCTCAGAAAATCTTGTTGAGAGA
GAGGGAGAGCGGCTGACCAAAAGCCCACCAATAAAGATGCCGACTCTCTC
AAAGCTCTACACGATGCAAGAAGCTGCTCACCACAACACCAAAGACGATT
GCTGGATTGTCGTTCATAACAAGGTGTATGATGTCACTTCATATTTGGAC
GATCATCCTGGTGGAGATGATGTAGTTCTTGCTGCAACGGCAAAAGATGC
AACAGACGAATTTGAAGATGCTGGGCATAGCAAAGATGCAAGGGAACTCC
TGGAGAGCTTTTGTATCGGTGAACTTGACACTTCATCTCCATTGATCCCA
GAACTTGAGATTTCGTCTAAAAGGCAACCGTCAGATTTTGCACTAAAGCT
CAAGAACTTGACAAAGCAATACTGGGCTGCTCCTGTTGCTGTTGTTGGCA
TCTCCGTGATGGTTGGCTTCTTGTGCTTGCGCAAGAAGTGAACCAACGCA
TCTCCATTAAACTGTCTAGTATGCTTGCATGAAATTTTGGAATTGCAAAA
GCAGGCTATAATTTATAGAAAAACGGTGACGCACAATAATTTCTCTTTTC
TATTTTTATTTTTTTAAGAGTTCTACATAAAAAAAAAAAAAAAAAAAAAA
A
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