DR405938

Overview
NameDR405938
Unique NameDR405938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: NIA_FUSOX (Nitrate reductase [NADPH] OS=Fusarium oxysporum GN=NIA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  140 PTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLI 397
            P +++  T++E   H+ +++ W VV  +VYD T YL  HPGG   +  A  +DAT+EF  A HS++A+ +L ++ IG LD  S  I
Sbjct:  543 PQINRKITIEELKAHSGEEEPWFVVKGEVYDGTPYLSGHPGGAASIFGAAGQDATEEFM-AIHSENAKAMLPTYHIGTLDEESRAI 627          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  152 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDAR-ELLESFCIGELDT 382
            KLYT  E + HN K+D WI+V  KVY++T ++  HPGG+D++L +  +DAT+ FE      D    L++ + IG + +
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISS 90          
BLAST of DR405938 vs. ExPASy Swiss-Prot
Match: SCS7_YEAST (Inositolphosphorylceramide-B C-26 hydroxylase OS=Saccharomyces cerevisiae GN=SCS7 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  152 KLYTMQEAAHHNTKDDCWIVVHN-KVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAG---HSKDARELLE-SFCIGELDT 382
            +L++ +    HNT +DCW+   N K+YDVT +L +HPGGD+ +L    KD T+  +D+    HS  A E+LE  + IG L T
Sbjct:   10 ELFSKKTVQEHNTANDCWVTYQNRKIYDVTRFLSEHPGGDESILDYAGKDITEIMKDSDVHEHSDSAYEILEDEYLIGYLAT 91          
The following BLAST results are available for this feature:
BLAST of DR405938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
NIA_FUSOX6.467e-1139.53Nitrate reductase [NADPH] OS=Fusarium oxysporum GN... [more]
FAD5B_DICDI6.467e-1139.74Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
SCS7_YEAST8.446e-1141.46Inositolphosphorylceramide-B C-26 hydroxylase OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248D21 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248D21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405938 ID=DR405938; Name=DR405938; organism=Citrus sinensis; type=EST; length=701bp
GGGGTTTAACCCGAGAGACAGAAAACGGGCCTGAGATGCCAAATCCCAAT
TCTCGAGCACAGGGTTGAAGGTGAGGATCTCAGAAAATCTTGTTGAGAGA
GAGGGAGAGCGGCTGACCAAAAGCCCACCAATAAAGATGCCGACTCTCTC
AAAGCTCTACACGATGCAAGAAGCTGCTCACCACAACACCAAAGACGATT
GCTGGATTGTCGTTCATAACAAGGTGTATGATGTCACTTCATATTTGGAC
GATCATCCTGGTGGAGATGATGTAGTTCTTGCTGCAACGGCAAAAGATGC
AACAGACGAATTTGAAGATGCTGGGCATAGCAAAGATGCAAGGGAACTCC
TGGAGAGCTTTTGTATCGGTGAACTTGACACTTCATCTCCATTGATCCCA
GAACTTGAGATTTCGTCTAAAAGGCAACCGTCAGATTTTGCACTAAAGCT
CAAGAACTTGACAAAGCAATACTGGGCTGCTCCTGTTGCTGTTGTTGGCA
TCTCCGTGATGGTTGGCTTCTTGTGCTTGCGCAAGAAGTGAACCAACGCA
TCTCCATTAAACTGTCTAGTATGCTTGCATGAAATTTTGGAATTGCAAAA
GCAGGCTATAATTTATAGAAAAACGGTGACGCACAATAATTTCTCTTTTC
TATTTTTATTTTTTTAAGAGTTCTACATAAAAAAAAAAAAAAAAAAAAAA
A
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