DR405930

Overview
NameDR405930
Unique NameDR405930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6302 contig Csv1_Contig6302:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405930 vs. ExPASy Swiss-Prot
Match: CIB1_HUMAN (Calcium and integrin-binding protein 1 OS=Homo sapiens GN=CIB1 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 2.645e-11
Identity = 44/174 (25.29%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  311 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL--------DRNAKGFISADEFLSVPEFAMNPLSQRLLKMV------DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGD 778
            MG + S L++  + E Q       ++QEI+  ++RFC+L        + + +  +  ++ LS+PE   NP  +R+ ++       D L+F+DF+  LSVFS  A+   K    F+++D D +G ++  D+  ++  L+G    + +S  + +Q++  + +++   RD  + L +
Sbjct:    1 MGGSGSRLSKELLAEYQDL--TFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 172          
BLAST of DR405930 vs. ExPASy Swiss-Prot
Match: CIB1_MOUSE (Calcium and integrin-binding protein 1 OS=Mus musculus GN=Cib1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 45/174 (25.86%), Postives = 90/174 (51.72%), Query Frame = 2
Query:  311 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL--------DRNAKGFISADEFLSVPEFAMNPLSQRLLKMV------DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGD 778
            MG + S L++  + E Q       ++QEI+  ++RFC+L        + +    +S ++ LS+PE   NP  +R+  +       D L+F+DF+  LSVFS  A+   K    F+++D D +G +   D+ +++  L+G    + +S  + +Q++  + +++   RD  + L +
Sbjct:    1 MGGSGSRLSKELLAEYQDL--TFLTKQEILLAHRRFCELLPPEQRTVEESLHTRVSFEQILSLPELKANPFKERICMVFSTSPTRDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLDREDLSQLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 172          
BLAST of DR405930 vs. ExPASy Swiss-Prot
Match: CIB1_RAT (Calcium and integrin-binding protein 1 OS=Rattus norvegicus GN=Cib1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 45/174 (25.86%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  311 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL--------DRNAKGFISADEFLSVPEFAMNPLSQRLLKMV------DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGD 778
            MG + S L++  + E Q       ++QEI+  ++RFC+L        + +    +S ++ LS+PE   NP  +R+  +       D L+F+DF+  LSVFS  A+   K    F+++D D +G +   D+  ++  L+G    + +S  + +Q++  + +++   RD  + L +
Sbjct:    1 MGGSGSRLSKELLAEYQDL--TFLTKQEILLAHRRFCELLPPEHRTVEESLHTRVSFEQILSLPELKANPFKERICMVFSTSPTRDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLDREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 172          
BLAST of DR405930 vs. ExPASy Swiss-Prot
Match: CHP2_HUMAN (Calcineurin B homologous protein 2 OS=Homo sapiens GN=CHP2 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 42/142 (29.58%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  380 FSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLK--MVDGLNFKDFVAFLSVFS-------------------AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 742
            FSQ  ++ L+ RF  LDRN KG++S  +   +   A+NPL  R+++    DG    DF  F+ V +                      S + K+   F++YD D +GK+S +++L+VLR + G  +++EQ E +  +  ++A
Sbjct:   23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEA 164          
The following BLAST results are available for this feature:
BLAST of DR405930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CIB1_HUMAN2.645e-1125.29Calcium and integrin-binding protein 1 OS=Homo sap... [more]
CIB1_MOUSE3.454e-1125.86Calcium and integrin-binding protein 1 OS=Mus musc... [more]
CIB1_RAT5.892e-1125.86Calcium and integrin-binding protein 1 OS=Rattus n... [more]
CHP2_HUMAN7.696e-1129.58Calcineurin B homologous protein 2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248D13 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248D13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405930 ID=DR405930; Name=DR405930; organism=Citrus sinensis; type=EST; length=780bp
GGGGACGAGGAATATCCCACGCAATTCTCCGAAAATCAACGGCCGATAAA
ACGACGAAACATAAAAAAGAATGTTACTGCGTGACAGAGAATAATCGGTG
ATGAGGATGAACATCAGATTCCTCGTCATCTAGTACAAACAAAATACTAT
TCTGTGTGTTTTCAATGGCTCGATGATGACGAAGGAGTTTCTGTCATCTA
TATTTCCCGATACTTCATCTTCATCTAAACTCATCTCCTAGCGGTCGGTT
CTTTTTTTCCTACATTTTCTGTTTGTTTCCCGAGAAAACCCAGTTTTGGA
GCGAGAATCAATGGGGACTGCCTCGTCTATGCTAACTCAATATGATATTG
AAGAGGTTCAACAGCACTGCCACAATCTATTTTCTCAACAAGAAATAGTG
TCGTTGTACCAAAGGTTTTGCCAGCTAGATAGAAATGCCAAGGGATTCAT
CTCTGCAGATGAGTTCTTGTCGGTGCCTGAATTTGCAATGAATCCACTTT
CTCAGAGGTTGCTAAAGATGGTGGATGGGTTGAACTTCAAGGATTTTGTG
GCCTTCTTGTCTGTTTTCAGTGCTAAGGCAAGCATGCAGCAGAAAGTTCA
GCTTATTTTCAAAGTGTACGACTCAGACTGTAATGGAAAGGTTTCTTTCA
ATGACATATTGGAAGTGCTGCGGGATTTGTCTGGTTCTTTTATGTCCGAT
GAGCAAAGAGAGCAAGTCTTGACCCAAGTATTCAAGGATGCAGGTTACAC
AAGGGATTCTTATTTAACGTTGGGGGACTT
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