DR405646

Overview
NameDR405646
Unique NameDR405646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_BOVIN (40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKK 524
            ++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR YL+LP EIVPATL++
Sbjct:    2 LMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRR 96          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10B_DROME (40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.692e-27
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 3
Query:  252 IPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAK 533
            +P+ +R  I +YLF+EGV  AKKD++  KHPE++ +PNL VIK MQS  S+  V+E FAW HYYWYLTNEGIE LR YL+LP EIVP+TLK+ A+
Sbjct:    3 MPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPAR 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10B_SCHPO (40S ribosomal protein S10-B OS=Schizosaccharomyces pombe GN=rps10b PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.210e-27
Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPA 539
            +IP++NR+ I + LFQ+GV  AKKD+NL KHPE+ VPNLQVIK  QS  S+ Y++  + W  +Y+ LTNEG+E+LR YL+LP+E+VPAT K+Q +PA
Sbjct:    2 LIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPA 98          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_XENLA (40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKK 524
            ++P+K+R  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR +L+LP EIVPATL++
Sbjct:    2 LMPKKDRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRR 96          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_DICDI (40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 6.429e-27
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQA 530
            +IP +N+  I +YLFQEGV  A KD++LAKHP+I+ V NL V+++++SFKS+++V ETF W +YYW LT EGI++LR YL +P  +VPAT+KKQA
Sbjct:    3 LIPTENKLAIYRYLFQEGVLVAPKDFHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFNWQYYYWVLTEEGIKYLRTYLQVPESVVPATMKKQA 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10A_SCHPO (40S ribosomal protein S10-A OS=Schizosaccharomyces pombe GN=rps10a PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.443e-26
Identity = 53/96 (55.21%), Postives = 74/96 (77.08%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            +IP++NR+ I + LF +GV  AKKD+NL KHPE+ VPNLQVIK  QS  S+ Y++  + W  +Y+ LTNEG+E+LR YL+LP+E+VPAT K+Q +P
Sbjct:    2 LIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRP 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10L_HUMAN (Putative 40S ribosomal protein S10-like protein OS=Homo sapiens GN=RPS10P5 PE=5 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATL 518
            ++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+  V+E FAW H+YWYLTNEG ++LR YL+LP EIVPATL
Sbjct:    2 LMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQFAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATL 94          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10A_DROME (40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.283e-26
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 3
Query:  252 IPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAK 533
            IP+ NR  I +YLF+EGV  AKKD  + KH E+D +PNLQVIK+MQS  S+ +V+E FAW H+YW LTNEGIE LR YL+LP EIVP+TL +  +
Sbjct:    3 IPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTR 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10B_YEAST (40S ribosomal protein S10-B OS=Saccharomyces cerevisiae GN=RPS10B PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPA 539
            ++P++ R +I +YLFQEGV  AKKD+N AKH EID  NL VIK +QS  SK YV+  F+W +YY+ LT EG+E+LR YLNLP  IVP T  ++  P+
Sbjct:    2 LMPKQERNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPS 98          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10A_YEAST (40S ribosomal protein S10-A OS=Saccharomyces cerevisiae GN=RPS10A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 53/96 (55.21%), Postives = 70/96 (72.92%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            ++P+++R +I +YLFQEGV  AKKD+N AKH EID  NL VIK +QS  SK YV+  F+W +YY+ LT EG+E+LR YLNLP  IVP T  ++  P
Sbjct:    2 LMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNP 97          
The following BLAST results are available for this feature:
BLAST of DR405646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS10_BOVIN3.409e-2861.0540S ribosomal protein S10 OS=Bos taurus GN=RPS10 P... [more]
RS10B_DROME1.692e-2761.0540S ribosomal protein S10b OS=Drosophila melanogas... [more]
RS10B_SCHPO2.210e-2756.7040S ribosomal protein S10-B OS=Schizosaccharomyces... [more]
RS10_XENLA3.769e-2758.9540S ribosomal protein S10 OS=Xenopus laevis GN=rps... [more]
RS10_DICDI6.429e-2756.8440S ribosomal protein S10 OS=Dictyostelium discoid... [more]
RS10A_SCHPO2.443e-2655.2140S ribosomal protein S10-A OS=Schizosaccharomyces... [more]
RS10L_HUMAN4.167e-2660.22Putative 40S ribosomal protein S10-like protein OS... [more]
RS10A_DROME9.283e-2660.0040S ribosomal protein S10a OS=Drosophila melanogas... [more]
RS10B_YEAST1.584e-2554.6440S ribosomal protein S10-B OS=Saccharomyces cerev... [more]
RS10A_YEAST1.584e-2555.2140S ribosomal protein S10-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247C11 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405646 ID=DR405646; Name=DR405646; organism=Citrus sinensis; type=EST; length=609bp
GGGGAGCTAGGGTTTTGNNNNNACAGAAGCGATAAGAGTGTGAGATTTGT
TCTTCTTTGCCGCCTCTTTTCTCAATCATCACCTCTTCATCGCAATCATG
GTAAGTGCAGCGTGTCTCTCTCTCTCTATCTATCTATCTATCTGAAGTTT
TATCTTGTTGTTGCTGTTTGGCTTCCGAGAAATTTACATCTTGGAACAAG
AAACCTTAAGAGATTCAAAGTTGTATTGCCTCGTTTTATCATCTTTAGAT
CATTCCAGAGAAGAACCGCCGTGAGATCTCCAAGTACCTCTTCCAAGAGG
GTGTGTGCTACGCAAAGAAGGACTACAATTTGGCAAAGCACCCAGAAATC
GATGTCCCGAATCTACAGGTGATTAAGTTGATGCAGAGCTTCAAGTCGAA
GGAGTACGTCCGCGAGACCTTTGCCTGGATGCATTATTACTGGTACCTTA
CCAATGAAGGCATTGAGTTCCTCAGAGGTTACCTCAATCTTCCTTCTGAA
ATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGCCCGCAGGTGGTCGTCC
TTTTGGTGGCCCAGGGGGTGATCGCCCACGTGGCCCACCACGCTTCGATG
GTAGAGAGA
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