DR405646

Overview
NameDR405646
Unique NameDR405646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.598e-44
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            II E NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGIEFLR YLNLPS++VPATLKK AKP
Sbjct:    2 IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.393e-44
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            II E NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGIEFLR YLNLPS++VPATLKK AKP
Sbjct:    2 IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 4.432e-44
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            IIP+KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W +YYWYLTN+GIE LR YLNLPSEIVPATLKK A+P
Sbjct:    2 IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.689e-41
Identity = 82/97 (84.54%), Postives = 89/97 (91.75%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            II E NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGI+FLR YLNLPSEIVPATLKKQ KP
Sbjct:    2 IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.642e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAK 533
            ++P++NR  I +YLF+EGV  AKKDY+  KHP+++ +PNLQVIK MQS KS+ YV+E FAW H+YWYLTNEGIE+LR +L+LP EIVPATLK+  +
Sbjct:    2 LMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.642e-30
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            ++ +KNR  I +YLF+EGV  AKKD++L KH EIDVPNL VI+ MQS  S+ YV+E F W HYYWYL NEGI++LR +L+LP EIVPATLK+Q +P
Sbjct:    2 LMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.384e-29
Identity = 61/99 (61.62%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            ++P+KNR  I + LF+EGV  AKKD +LAKHPE+   +VPNL V+K MQS KS  YV+E FAW H+YWYLTNEGI++LR +L+LP EIVPATL++Q +P
Sbjct:    2 LMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKK 524
            ++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR YL+LP EIVPATL++
Sbjct:    2 LMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRR 96          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKK 524
            ++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR YL+LP EIVPATL++
Sbjct:    2 LMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRR 96          
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKK 524
            ++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR YL+LP EIVPATL++
Sbjct:    2 LMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRR 96          
The following BLAST results are available for this feature:
BLAST of DR405646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH2.598e-4486.4640S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS101_ARATH3.393e-4486.4640S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS10_ORYSJ4.432e-4486.4640S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS102_ARATH2.689e-4184.5440S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR3.642e-3062.5040S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU3.642e-3062.5040S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_ICTPU1.384e-2961.6240S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_RAT3.409e-2861.0540S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE3.409e-2861.0540S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_HUMAN3.409e-2861.0540S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247C11 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405646 ID=DR405646; Name=DR405646; organism=Citrus sinensis; type=EST; length=609bp
GGGGAGCTAGGGTTTTGNNNNNACAGAAGCGATAAGAGTGTGAGATTTGT
TCTTCTTTGCCGCCTCTTTTCTCAATCATCACCTCTTCATCGCAATCATG
GTAAGTGCAGCGTGTCTCTCTCTCTCTATCTATCTATCTATCTGAAGTTT
TATCTTGTTGTTGCTGTTTGGCTTCCGAGAAATTTACATCTTGGAACAAG
AAACCTTAAGAGATTCAAAGTTGTATTGCCTCGTTTTATCATCTTTAGAT
CATTCCAGAGAAGAACCGCCGTGAGATCTCCAAGTACCTCTTCCAAGAGG
GTGTGTGCTACGCAAAGAAGGACTACAATTTGGCAAAGCACCCAGAAATC
GATGTCCCGAATCTACAGGTGATTAAGTTGATGCAGAGCTTCAAGTCGAA
GGAGTACGTCCGCGAGACCTTTGCCTGGATGCATTATTACTGGTACCTTA
CCAATGAAGGCATTGAGTTCCTCAGAGGTTACCTCAATCTTCCTTCTGAA
ATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGCCCGCAGGTGGTCGTCC
TTTTGGTGGCCCAGGGGGTGATCGCCCACGTGGCCCACCACGCTTCGATG
GTAGAGAGA
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