DR405646

Overview
NameDR405646
Unique NameDR405646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: PLEC1_RAT (Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 3 
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            ++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S K++  VRETFAW H+YWYLTNEGI+ LR YL+LP EIVPA+L++  +P
Sbjct:    6 LMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: PLEC1_MOUSE (Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 3 
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            ++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S K++  VRETFAW H+YWYLTNEGI+ LR YL+LP EIVPA+L++  +P
Sbjct:    6 LMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of DR405646 vs. ExPASy Swiss-Prot
Match: PLEC1_HUMAN (Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 3 
Query:  249 IIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 536
            ++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S +++  VRETFAW H+YWYLTNEGI  LR YL+LP EIVPA+L++  +P
Sbjct:    6 LMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRP 103
The following BLAST results are available for this feature:
BLAST of DR405646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PLEC1_RAT3.090e-2153.06Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2[more]
PLEC1_MOUSE3.090e-2153.06Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2[more]
PLEC1_HUMAN6.885e-2152.04Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247C11 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405646 ID=DR405646; Name=DR405646; organism=Citrus sinensis; type=EST; length=609bp
GGGGAGCTAGGGTTTTGNNNNNACAGAAGCGATAAGAGTGTGAGATTTGT
TCTTCTTTGCCGCCTCTTTTCTCAATCATCACCTCTTCATCGCAATCATG
GTAAGTGCAGCGTGTCTCTCTCTCTCTATCTATCTATCTATCTGAAGTTT
TATCTTGTTGTTGCTGTTTGGCTTCCGAGAAATTTACATCTTGGAACAAG
AAACCTTAAGAGATTCAAAGTTGTATTGCCTCGTTTTATCATCTTTAGAT
CATTCCAGAGAAGAACCGCCGTGAGATCTCCAAGTACCTCTTCCAAGAGG
GTGTGTGCTACGCAAAGAAGGACTACAATTTGGCAAAGCACCCAGAAATC
GATGTCCCGAATCTACAGGTGATTAAGTTGATGCAGAGCTTCAAGTCGAA
GGAGTACGTCCGCGAGACCTTTGCCTGGATGCATTATTACTGGTACCTTA
CCAATGAAGGCATTGAGTTCCTCAGAGGTTACCTCAATCTTCCTTCTGAA
ATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGCCCGCAGGTGGTCGTCC
TTTTGGTGGCCCAGGGGGTGATCGCCCACGTGGCCCACCACGCTTCGATG
GTAGAGAGA
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