CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG1_BOVIN (Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 4.274e-98
Identity = 180/237 (75.95%), Postives = 207/237 (87.34%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA +RLH+QNP+F+Q N LVST+MSASTTTLRYPGYMNNDL+GL+ASLIPTPR HFLMTGYTPLT ++    +RKTTVLDVMRRLLQ KN+MVS+  R ++ +   YI+ILNIIQGEVDPTQVH+SLQRIRERKL NFI WGPASIQVALSRKSPY+ +AHRVSGLM+A+HTSI  LF +   QY+KLRK++AFL+ +R
Sbjct:  175 QDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST-GRDRQTNHC-YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG2_BOVIN (Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.582e-98
Identity = 180/237 (75.95%), Postives = 206/237 (86.92%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA +RLH+QNP+F+Q N LVST+MSASTTTLRYPGYMNNDL+GL+ASLIPTPR HFLMTGYTPLT ++    +RKTTVLDVMRRLLQ KN+MVS+  R ++ +   YI+ILNIIQGEVDPTQVH+SLQRIRERKL NFI WGPASIQVALSRKSPY+ +AHRVSGLM+A+HTSI  LF     QY+KLRK++AFL+ +R
Sbjct:  175 QDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST-GRDRQTNHC-YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQYDKLRKREAFLEQFR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.770e-97
Identity = 179/237 (75.53%), Postives = 205/237 (86.50%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA +RLH+QNP+F+Q N LVST+MSASTTTLRYPGYMNNDL+GL+ASLIPTPR HFLMTGYTPLT ++    +RKTTVLDVMRRLLQ KN+MVS+  R ++ +   YI+ILNIIQGEVDPTQVH+SLQRIRERKL NFI WGPASIQVALSRKSPY+ +AHRVSGLM+A+HTSI  LF     Q++KLRK+ AFL+ +R
Sbjct:  175 QDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST-GRDRQTNHC-YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.725e-97
Identity = 179/237 (75.53%), Postives = 204/237 (86.08%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNSLLTLKRLT NADCVVVLDNT LNRIA  RLH+QNP+F Q N LVST+MSASTTTLRYPGYMNNDL+GL+ASLIPTPR HFLMTGYTPLT ++    +RKTTVLDVMRRLLQ KN+MVS+  R ++ +   YI+ILNIIQGEVDPTQVH+SLQRIRERKL NFI WGPASIQVALSRKSPY+ +AHRVSGLM+A+HTSI  LF +   QY+KLRK++AFL+ +R
Sbjct:  175 QDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST-GRDRQTNHC-YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 6.171e-97
Identity = 178/237 (75.11%), Postives = 206/237 (86.92%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E S VVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA +RLH+QNP+F+Q N LVST+MSASTTTLRYPGYMNNDL+GL+ASLIPTPR HFLMTGYTPLT ++    +RKTTVLDVMRRLLQ KN+MVS+  R ++ +   YI+ILNIIQGEVDPTQVH+SLQRIRERKL NFI WGPASIQVALSRKSPY+ +AHRVSGLM+A+HT+I  LF +   QY+KLRK++AFL+ +R
Sbjct:  175 QDEMSHVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST-GRDRQTNHC-YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTNISSLFERTCRQYDKLRKREAFLEQFR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.375e-96
Identity = 179/237 (75.53%), Postives = 204/237 (86.08%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA +RLH+QNP+F+Q N LVST+MSASTTTLRYPGYMNNDL+GL+ASLIPTPR HFLMTGYTPLT ++    +RKTTVLDVMRRLLQ KN+MVS+  R ++ +   YI+ILNIIQGEVDPTQVH+SLQRIRERKL NFI WGPASIQVALSRKSPY+ +AHRVSGLM+A+HTSI  LF     QY+KL K+ AFL+ +R
Sbjct:  175 QDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST-GRDRQTNHC-YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQYDKLWKRGAFLEQFR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.375e-96
Identity = 177/237 (74.68%), Postives = 206/237 (86.92%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNSLLTLKRLT NADCVVVLDNTALN IA +RLH+QNP+F+Q N LVST+MSASTTTLRYPGYMNNDL+GL+ASLIPTPR HFLMTGYTPLT ++    +RKTTVLDVMRRLLQ KN+MVS+  R ++ +   YI+ILNIIQGEVDPTQVH+SLQRIRERKL NFI WGPASIQVALSRKSPY+ +AHRVSGLM+A+HTSI  LF +   Q++KLRK++AF++ +R
Sbjct:  175 QDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST-GRDRQTNHC-YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQFDKLRKREAFMEQFR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.375e-96
Identity = 177/237 (74.68%), Postives = 206/237 (86.92%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNSLLTLKRLT NADCVVVLDNTALN IA +RLH+QNP+F+Q N LVST+MSASTTTLRYPGYMNNDL+GL+ASLIPTPR HFLMTGYTPLT ++    +RKTTVLDVMRRLLQ KN+MVS+  R ++ +   YI+ILNIIQGEVDPTQVH+SLQRIRERKL NFI WGPASIQVALSRKSPY+ +AHRVSGLM+A+HTSI  LF +   Q++KLRK++AF++ +R
Sbjct:  175 QDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST-GRDRQTNHC-YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQFDKLRKREAFMEQFR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 337.421 bits (864), Expect = 5.977e-92
Identity = 174/238 (73.11%), Postives = 200/238 (84.03%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANV-IRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNS+LTLKRLT  AD VVVLDNTALNRIA ERLH+Q PTF Q N+LVST+MS STTTLRYP YMNN+L+GL ASLIPTP+ HFLMTGYTPL  + +    +RKTTVLDVMRRLLQ KN+MVS  A T + S+  ++SILNIIQGEVDP+QVH+SLQRIRERKL NFI WGPASIQVAL R SPYVQ+AH+VSGLM+A+HT I  LF + L+QY+KLRK+ AFLDN+R
Sbjct:  175 QDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVS--ALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLRKRNAFLDNFR 410          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.967e-91
Identity = 165/234 (70.51%), Postives = 198/234 (84.62%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S VVVQ YNS+LTLKRL  NAD  VVLDN AL+RI  E L +  PT  QTNSLVSTVMSASTTTLRYPGYMNNDLVG+LASLIPTP+CHFL+TGYTPL+++RQ   +RKT+VLDVMRRLLQ +NIMVS+  +T      KYISILNIIQG+VDPTQ+H SLQRIRE+++  FI+WGPASIQ+ALS+KSPY++++H+VSGLMLA+HTS+ HLFS  + QY+K+RKKQAFL NY
Sbjct:  174 DDSSVVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSASTTTLRYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKT-----GKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGPASIQIALSKKSPYIKSSHKVSGLMLANHTSVNHLFSHIIQQYDKVRKKQAFLANY 402          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBG1_BOVIN4.274e-9875.95Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 ... [more]
TBG2_BOVIN5.582e-9875.95Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 ... [more]
TBG2_HUMAN2.770e-9775.53Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=... [more]
TBG1_CANFA4.725e-9775.53Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG1_XENLA6.171e-9775.11Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 P... [more]
TBG2_MOUSE1.375e-9675.53Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]
TBG1_RAT1.375e-9674.68Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE1.375e-9674.68Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBG2_DROME5.977e-9273.11Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_DICDI2.967e-9170.51Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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