CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB6_CHICK (Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 75/234 (32.05%), Postives = 131/234 (55.98%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN++L++ +L  N D    +DN AL  I    L L NPT+   N LVS  MS  TT+LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  +V ++ +++   +N+M +   R     + +Y+++  I +G +   +V E L  ++ +    F+EW P +++VA+    P      +++   + ++T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNAILSIHQLIENTDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSLTMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-RGSQQYRALSVPELTQQMFDARNMMAACDPR-----RGRYLTVACIFRGRMSTREVDEQLLSVQTKNSSYFVEWIPNNVKVAVCDIPP---RGLKMAATFIGNNTAIQELFIRVSEQFSAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 76/234 (32.48%), Postives = 131/234 (55.98%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  P+F + N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R + + R  TV ++ +++   KN+M ++  R       +Y++     +G++   +V E +  ++ +    F+EW P +++ ++    P      +++G  + + TSI+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPSFGELNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQMYRALTVPELTQQMWDAKNMMCAADPR-----HGRYLTASACFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDMPP---RGLKMAGTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 78/234 (33.33%), Postives = 130/234 (55.56%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  PTF   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++  +KN+M ++  R       +Y++   + +G++   +V E +  ++ +    F+EW P +++ ++    P   T   +S   + + TSI+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDSKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP---TGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 75/234 (32.05%), Postives = 125/234 (53.42%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I    L L  PT+   N LVS  MS  TT LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  TV D+ +++   KN+M +      E    +Y+++  + +G +   +V E +  ++ +    F+EW P +++ A+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT-SRGSQQYRALTVPDLTQQMFDAKNMMAAC-----EPGHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 79/234 (33.76%), Postives = 130/234 (55.56%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD V+ +DN AL  I    L L  PT+   N LVS VMS  T  LR+PG +N+DL  L  +LIP PR HF + GY PLT  R A   R  TV ++ +++  ++N+M +S  R       +Y++     +G++   +V E +  ++ +    F+EW P +I+ ++    P      ++S   + ++T I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENADEVMCIDNEALYDICFRTLKLTTPTYGDLNHLVSGVMSGITACLRFPGQLNSDLRKLAVNLIPFPRLHFFLIGYAPLTA-RSAMGFRALTVPELTQQIFDSRNMMAASDPR-----HGRYLTASATFRGKMSTKEVDEQMHAVQTKNSSFFVEWIPNNIKSSVCDIPP---KGMKMSATFIGNNTCIQELFKRIGLQFSAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 72/231 (31.17%), Postives = 129/231 (55.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFL 836
            + SD VV+PYN+ L++ +L  + D    +DN AL  I    L L NP ++  N LVS  MS  TT+LR+PG +N+DL  L  +++P PR HF + G+ PL   R +   +  T+L++ R++   KN+M +      + S  +Y+++  + +G V   +V + +   + R    F+EW P +++ A+    P      +V+G  + + T+I+ LF++   Q+  + +++AFL
Sbjct:  174 KVSDTVVEPYNATLSVHQLVESTDETFCIDNEALYDICFRTLKLPNPNYSDLNHLVSLTMSGVTTSLRFPGQLNSDLRKLAVNMVPFPRLHFFVPGFAPL-ASRTSQSYQSCTILELTRQMFDAKNMMAAC-----DPSHGRYLTVAAMYRGRVSMKEVEDRILETQTRNSTYFVEWIPNNVKTAVCDIPP---IDFKVAGTFIGNTTAIQELFTRVSDQFSAMFRRRAFL 395          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.022e-31
Identity = 77/234 (32.91%), Postives = 128/234 (54.70%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L+  +L  N+D    +DN AL  I +  L L  P++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A   R  TV ++ +++   KN+M        +    +Y++   I +G+V   +V + ++ ++ +    F+EW P ++Q AL    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  175 KVSDTVVEPYNATLSNHQLVENSDETFCIDNEALYDICMRTLKLSEPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAYSFRVVTVPELTQKMYDPKNMMC-----LLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPP---RGLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWY 399          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_ELEIN (Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.022e-31
Identity = 78/234 (33.33%), Postives = 129/234 (55.13%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  PTF   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++   KN+M ++  R       +Y++   + +G++   +V E +  ++ +    F+EW P +++ ++    P   T   +S   + + TSI+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLT---MSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.022e-31
Identity = 76/234 (32.48%), Postives = 130/234 (55.56%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  P+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  +V ++ +++  +KN+M ++  R       +Y++   I +G++   +V E +  ++ +    F+EW P +++  +    P   T  +++   + + TSI+ +F +   Q+  + +++AFL  Y
Sbjct:  172 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMLGFAPLT-SRGSQQYRALSVPEITQQMWDSKNMMCAADPR-----HGRYLTASAIFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 396          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.022e-31
Identity = 74/234 (31.62%), Postives = 127/234 (54.27%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SDVV++PYN+ L++ +L  N D    +DN AL  I    L L NPT+   N LVS  MS  TT LR+PG +N DL  L  +++P PR HF M G+ PL+  R A   R   V ++ +++   KN+M +   R       +Y+++  + +G +   +V E + +++ +    F+EW P +++ A+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDVVLEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLANPTYGDLNHLVSVTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSA-RDAAAYRALNVAELTQQMFDAKNMMAACDPR-----HGRYLTVAAMFRGRMSMREVDEQMMQVQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMSATFIGNTTAIQELFKRISEQFTAMFRRKAFLHWY 398          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBB6_CHICK1.186e-3132.05Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1[more]
TBB4_WHEAT1.186e-3132.48Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB3_WHEAT1.186e-3133.33Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB3_CHICK1.186e-3132.05Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1[more]
TBB2_PHYPO1.186e-3133.76Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]
TBB3_ECHMU1.549e-3131.17Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB_AJECA2.022e-3132.91Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBB3_ELEIN2.022e-3133.33Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 P... [more]
TBB2_PEA2.022e-3132.48Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB1_BRUPA2.022e-3131.62Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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