CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.511e-90
Identity = 173/235 (73.62%), Postives = 190/235 (80.85%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVER--QANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            SDVVVQPYNSLLTLKRLTLNAD VVVLDN AL  IA +RLH+QNPTF Q N LVSTVMSASTTTLRYPGYMNNDLV ++ASLIPTPRCHFL T YTP T ++   A  IRKTTVLDVMRRLLQ KN MVS         Q+ +ISILNIIQGE DP  VH+SL RIRERKL  FI WGPASIQVALS+KSPY++T HRVSGLMLA+HTSI  LF + L QY++LRK+ AFLD YR
Sbjct:  179 SDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVS----VNPGKQSCFISILNIIQGEADPNDVHKSLLRIRERKLATFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLDQYR 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 3.280e-90
Identity = 162/233 (69.53%), Postives = 196/233 (84.12%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            +DVVVQPYN LL++KRLTLNADCVVVLDN AL  IAV+RL +  PTF+Q NS+VSTVM+ASTTTLRYPGYMNND+VGL+ASL+PTPRCHFLMTGYTPL+++++ N +RKTTVLDVMRRLLQTKNIMV     T    +  Y+SILN+IQG+VDPTQVH+SLQRIRERKL NFI WGPASIQVALS+KSPY+ + H+VSGLMLA+HT IR +F     QY   RK+ A+++ ++
Sbjct:  176 NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKFNSVRKTTVLDVMRRLLQTKNIMV-----TGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFK 403          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.628e-89
Identity = 161/233 (69.10%), Postives = 195/233 (83.69%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            +DVVVQPYN LL++KRLTLNADCVVVLDN AL  IAV+RL +  PTF+Q NS+VSTVM+ASTTTLRYPGYMNND+VGL+ASL+PTPRCHFLMTGYTPL+++++   +RKTTVLDVMRRLLQTKNIMV     T    +  Y+SILN+IQG+VDPTQVH+SLQRIRERKL NFI WGPASIQVALS+KSPY+ + H+VSGLMLA+HT IR +F     QY   RK+ A+++ ++
Sbjct:  176 NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKFTSVRKTTVLDVMRRLLQTKNIMV-----TGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFK 403          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.628e-89
Identity = 172/242 (71.07%), Postives = 200/242 (82.64%), Query Frame = 3
Query:  138 QMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE-----RQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            Q E SDVVVQPYNS+LTLKRLT  AD VVVLDNTALNRIA +RLH+QNP+F+Q N+LVST+MS STTTLRYP YMNN+L+GL A LIPTP+ HFLMTGYTPLT +     +Q   +RKTTVLDVMRRLLQ KN+MVS+     +++   YISILNIIQGEVDPTQVH+SLQRIR+RK+  FI WGP SIQVALSR SPYVQ+ HRVSGLMLA+HTSI  LF + L+QY+KLRK+ AFLD +R
Sbjct:  175 QDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVST--GPDKSNHHCYISILNIIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPTSIQVALSRSSPYVQSNHRVSGLMLANHTSICSLFERALNQYDKLRKRGAFLDQFR 414          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.070e-88
Identity = 158/233 (67.81%), Postives = 194/233 (83.26%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            +DVVVQPYN LL++KRLTLNADCVVVLDN AL  IAV+RL +  PTF+Q NS+VSTVM+ASTTTLRYPGYMNND+VGL+ASL+PTPRCHFLMTGYTPL+++++   +RKTT LDVMRRLLQTKNIMV     T    +  Y+SILN+IQG+VDPTQVH+SLQRI+ERKL NFI WGPASIQVAL++KSPY+ + H+VSGLMLA+HT IR +F     QY   RK+ A+++ ++
Sbjct:  176 NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKYTSVRKTTFLDVMRRLLQTKNIMV-----TGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVALAKKSPYIDSGHKVSGLMLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFK 403          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.070e-88
Identity = 163/234 (69.66%), Postives = 194/234 (82.91%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLT-VERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            +DVVVQPYN LL++KRL LNADCVVVLDNTAL  IAV+RL L  PTF Q NS+VSTVM+ASTTTLRYPGYMNNDLVGL+ASL+PTPRCHFLMTGYTPL+ ++++   +RKTTVLDVMRRLLQTKNIM      T    +  Y+SILNIIQG+VDPTQVH+SLQRIRERKL NFI WGPASIQVALS+KSPY+++ H+VSGLMLA+HT IR +F     QY   RK+ A+++ ++
Sbjct:  176 NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMA-----TGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGLMLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFK 404          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.990e-87
Identity = 160/234 (68.38%), Postives = 196/234 (83.76%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTV-ERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            +D+VVQPYN +L++KRL LNADCVVVLDNTA+  IAV+RL L +PT +Q NS+VSTVM+ASTTTLRYPGYMNNDLVGL+ASL+PTPRCHFLMTGYTPL++ +++ + IRKTTVLDVMRRLLQT+NIM S   +     +  Y+SILNIIQG+VDPTQVH+SLQRIRER + NFI WGPASIQVALS+KSPY+++ ++VSGLMLA+HT IR +F     QY + RK+ AFL  YR
Sbjct:  176 NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIMTSGAIK-----KGAYMSILNIIQGDVDPTQVHKSLQRIRERNVANFIPWGPASIQVALSKKSPYIESDNKVSGLMLANHTGIRSIFQVLYGQYRQFRKRDAFLGTYR 404          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 6.401e-86
Identity = 164/235 (69.79%), Postives = 190/235 (80.85%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVER--QANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            SDVVVQPYNSLL LKRLTLNAD VVVLDN AL  IA +RLH QNPTF Q N LVSTVMSASTTTLRYPGYMNNDLV ++ASLIP+PRCHFL+T YTP T ++  +A  IRKTTVLDVMRRLL  KN MVS       + ++ +ISIL+IIQGE DP  VH+SL RIRER+  +FI WGPASIQVALS+KSPY++T HRVSGLMLA+HTSI  LF + L QY++LRK+ AFL+ Y+
Sbjct:  179 SDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVS----VNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYK 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 1.092e-85
Identity = 160/237 (67.51%), Postives = 191/237 (80.59%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVER--QANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            + +DVVV PYNSLL ++RLT NAD VVVLDN AL+RI  +RLH+Q P+F QTN LVSTVMSASTTTLRYPGYM+NDLVG++ASLIPTPR HFL+T YTP T +   QA  +RKTTVLDVMRRLLQ KN MVS       +  + YISILNIIQGE DPT VH+SL RIRER+L +FI WGPASIQVAL++KSPY+Q  HRVSGLMLA+HTS+  LF + + QY++LRK+ AFL+ Y+
Sbjct:  176 QAADVVVNPYNSLLAMRRLTQNADSVVVLDNAALSRIVADRLHVQEPSFQQTNRLVSTVMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTPFTGDNIDQAKTVRKTTVLDVMRRLLQPKNRMVS----INPSKSSCYISILNIIQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGLMLANHTSVATLFKRIVQQYDRLRKRNAFLEQYK 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.432e-85
Identity = 162/237 (68.35%), Postives = 192/237 (81.01%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVER--QANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            +  DVVVQPYNSLL LKRL  +AD VVVLDN AL RI+ +RLH+Q P+F QTN LVSTV++AST TLRYPGYMNNDLVG++ASLIPTPRCHFLMT YTP T ++  +A  IR+TTVLDVMRRLLQ KN MV     T  +  A YISILNIIQGEVDPT VH+SL RIRER+L NFI WGPASIQVAL+++SPYV T HRVSGLMLA+HTS+  LF + L Q+++LRK+ AF++ Y+
Sbjct:  176 QEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTSDQIDKAKTIRRTTVLDVMRRLLQPKNRMV----LTTPSKTACYISILNIIQGEVDPTDVHQSLLRIRERQLANFIPWGPASIQVALTKRSPYVTTNHRVSGLMLANHTSVASLFKRMLDQFDRLRKRNAFIEQYK 408          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBG_SCHJP2.511e-9073.62Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG1_EUPOC3.280e-9069.53Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG2_EUPOC1.628e-8969.10Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG1_DROME1.628e-8971.07Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG_EUPAE3.070e-8867.81Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG1_EUPCR3.070e-8869.66Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG2_EUPCR1.990e-8768.38Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_SCHPO6.401e-8669.79Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBG_EMENI1.092e-8567.51Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG_COPC72.432e-8568.35Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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