CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.177e-85
Identity = 152/235 (64.68%), Postives = 198/235 (84.26%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            E+SDVVVQPYNS+LTLKRL L+ D VVV+DNT+LNRI VERL L NPTF QTN+++S VMSASTTTLRYPG MNND++ L++SLI  P+CHFL+T YTP+T+++  + ++KTTVLDVM+RLL TKNIMVS+  R     +  YISILNII+GE DPTQVH+ LQRIR+RKLVNFI+W PASIQV L+++SP+V + H+V GLM+A+HTSI  LF +C++Q+++L K++AFL+NY+
Sbjct:  178 ESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSASTTTLRYPGSMNNDMISLISSLIINPKCHFLITSYTPITIDKHISNVQKTTVLDVMKRLLHTKNIMVSAPVR-----RGMYISILNIIRGETDPTQVHKGLQRIRDRKLVNFIKWNPASIQVTLAKQSPHVVSQHKVCGLMMANHTSISTLFERCVTQFDRLYKRRAFLENYK 407          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.077e-85
Identity = 161/234 (68.80%), Postives = 190/234 (81.20%), Query Frame = 3
Query:  153 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVER--QANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            DVVV PYNSLL ++RLT NAD VVVLDN AL+ IA +RLH+Q P+F QTN LVSTVMSASTTTLRYPGYM+NDLV +LASLIPTPRCHFLMT YTP T ++  QA  +RKTTVLDVMRRLLQ KN MVS    T    ++ YISILN+IQG+VDPT VH+SL RIRER+L  FI WGPASIQVAL+++SPYV  AHRVSGLMLA+HTSI  LF + + QY+ +RK+ AF++ Y+
Sbjct:  180 DVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVSILASLIPTPRCHFLMTSYTPFTGDQVEQAKTVRKTTVLDVMRRLLQPKNRMVS----TVPGKKSCYISILNVIQGDVDPTDVHKSLLRIRERRLATFIPWGPASIQVALTKRSPYVTMAHRVSGLMLANHTSIATLFKRIVRQYDGMRKRNAFMEAYK 409          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.059e-84
Identity = 159/237 (67.09%), Postives = 193/237 (81.43%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVER--QANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            ++ DVVVQPYNSLL++KRLT +AD V+VLDN AL++I  +RLH+Q  +FAQTN LVSTVMSAST TLRYPGYMNNDLVG++ASLIPTPRCHFL T YTP T ++  QA  +RKTTVLDVMRRLLQ KN +VS    T  +  A YISILNIIQGEVDPT VH+SL RIRER    FI WGPASIQVAL+++SPYVQT H+VSGLMLA+HT+I  +F + ++QY++LRK+ AF+  Y+
Sbjct:  176 DSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTSDKIEQAKAVRKTTVLDVMRRLLQPKNRLVS--MPTTPSRHACYISILNIIQGEVDPTDVHKSLLRIRERNSATFIPWGPASIQVALTKQSPYVQTTHKVSGLMLANHTNIASIFKRTVAQYDQLRKRNAFMPQYQ 410          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.169e-79
Identity = 148/235 (62.98%), Postives = 190/235 (80.85%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            E S VVV PYNS+L LKRL LNAD VVV+DNT+L+RIA ERL L   +F +TNS++STVM+ASTTTLRYPGYMNNDLVGL+ASL+PTPR HFLMT +TPL ++     I+KT+VLDVMRRLLQ KNIMVS   +     +  Y+SIL+II+G+VDPT +H+SLQRIRE+K+VNFI WGPASIQVALS++SPY    +RVSG M+A+H+++ +LF++ +  Y+ LRK+ AFL+ Y+
Sbjct:  176 ERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTK-----KGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSPYANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYK 405          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.821e-48
Identity = 105/158 (66.46%), Postives = 123/158 (77.85%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYT--PLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDP 611
            +  D+VVQPYNSLL+++RLT NAD VVVLDN AL RIA +RLH+  P+F QTN LVSTVMSASTTTLRYP Y +NDLVG++ASLIPTPRCHFLMT YT     VE QA  +RKTTVLDVMRRLLQ KN MVS+      + ++ Y+SILNIIQ +  P
Sbjct:  111 QDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSYTFSGENVE-QAKTVRKTTVLDVMRRLLQPKNRMVST---NPTSHKSCYMSILNIIQAKPTP 264          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.650e-47
Identity = 102/235 (43.40%), Postives = 145/235 (61.70%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            E+SDVVVQPYNS+LTL RL  N+DC+VV+DN++L R  ++ L +  PTF   N L+STVM+AST+T+R+PGYM      +   L+P     F++  YTP   +  + V+RK T  DVMRRLL  K   ++ Y +TK  S    +S+LNI+ G  D  +V  ++ R  ++ +VNF+ W P S  VAL +         RVSGL L + T    + SK   Q++KLRK++AFLD Y+
Sbjct:  170 ESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKT-RLAGYEQTKAQS---VVSMLNILHGVEDSGEVSRTVMRFLDKGMVNFVPWMPPSFNVALGKCIANETRPSRVSGLSLTNSTGASLILSKISGQFDKLRKQRAFLDIYK 400          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.721e-44
Identity = 101/239 (42.26%), Postives = 148/239 (61.92%), Query Frame = 3
Query:  135 MQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVI-RKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            M  E  DVVV PYNS+LTL+RL      VVV DN+AL  I   +  +   T    NS++S+ MSA T  LR+P  + N L  L+  L P+   HFLMT YTPL   RQ N I  +T+ +DVM+RL+Q +NIM    ART+   + KYIS+ +  QG+V   +++E+LQR  +R+L  F+ W   +I+V  +R SP V+  +R+SG++LA++TSIR+ F   L  ++++ KK+ +L   R
Sbjct:  169 MVKENPDVVVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPL---RQVNQISSRTSAIDVMKRLIQPQNIM----ARTR-LKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKRVYLQTDR 399          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.001e-38
Identity = 89/237 (37.55%), Postives = 142/237 (59.92%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE--RQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHR--VSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYR 848
            S+VVVQPYN++LTL+RL  N+D  V+ DN AL  +    L   N ++ QTN L+++VMS+ T +LR+P YM N L  + ++L+PTP  HFL   +TP T +    A   ++ +  DV+  L    N MV     T++     Y++I + +QG V+ + V  ++ + ++R  + F  W P S+ V L RKSPY  +A+   VSG+MLA+ +SI  +F K +S ++ + K+ AFL  ++
Sbjct:  179 SEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMV-----TRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQR--IKFAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLHKFQ 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.075e-36
Identity = 83/234 (35.47%), Postives = 135/234 (57.69%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD +V+PYN+ L++ +L  NAD    +DN AL  I    L L+ PT A  N LVS VMS  TT LR+PG +N+DL  L  +L+P PR HF M GY PL+   Q +  R  TV ++ ++L  +KN+M +S     +  + +Y+++    +G+V   +V + ++ ++ER    F+EW P ++Q A+    P      ++S   +A+ TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTIVEPYNATLSVHQLIENADETFCIDNEALYDICQHTLKLKQPTHADLNQLVSGVMSGITTCLRFPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLSAPGQQS-FRSLTVPELTQQLFDSKNMMAAS-----DPKRGRYLTVAAFFRGKVSIKEVEDQMRSVQERNSAYFVEWIPNNVQTAICSVPP---KDVKMSATFIANSTSIQELFKRVGDQFSAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_MYCGR (Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.309e-35
Identity = 81/234 (34.62%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  TV ++ +++   KN+M +S  R       +Y++   I +G+V   +V + ++ ++ +    F+EW P ++Q AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDATFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVTVPELTQQIFDPKNMMAASDFR-----NGRYLTCSAIYRGKVSMKEVEDQIRNVQNKNTAYFVEWIPNNVQTALCSIPP---RGLKMSSTFVGNSTSIQELFKRVGDQFSAMFRRKAFLHWY 398          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBG_PLAFO3.177e-8564.68Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_NEUCR7.077e-8568.80Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG_USTVI2.059e-8467.09Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]
TBG_RETFI1.169e-7962.98Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_COCHE1.821e-4866.46Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBG_ENCCU7.650e-4743.40Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_ENTHI2.721e-4442.26Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_ASHGO1.001e-3837.55Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBB1_GEOCN6.075e-3635.47Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]
TBB_MYCGR2.309e-3534.62Tubulin beta chain OS=Mycosphaerella graminicola G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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