CX070097
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 66/239 (27.62%), Postives = 123/239 (51.46%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT N+DC ++DN A I L ++ PT+ N L++ V+S+ T +LR+ G +N DL +L+P PR HF + Y+P+ +A +V ++ + + N MV RT +Y++ + +G+V P V ++ I+ R+ + F++W P ++ + + P ++ + ML++ TSI +S+ +++ + K+AF+ Y Sbjct: 180 QVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKA-FHESNSVQEITNQCFEPYNQMVKCDPRT-----GRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 412
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT ++DC ++DN A+ I L ++ PT+ N L+S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT ++DC ++DN A+ I L ++ PT+ N L+S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT ++DC ++DN A+ I L ++ PT+ N L+S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT ++DC ++DN A+ I L ++ PT+ N L+S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT ++DC ++DN A+ I L ++ PT+ N L+S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT ++DC ++DN A+ I L ++ PT+ N L+S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_CRIGR (Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT ++DC ++DN A+ I L ++ PT+ N L+S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24 Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+LT ++DC ++DN A+ I L ++ PT+ N L+S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24 Identity = 61/239 (25.52%), Postives = 127/239 (53.14%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+L+ L + D V+LDN A+ I L ++ PT+ N L++ V+S+ T +LR+ G +N D+ +L+P PR HF+++ Y P+ + + + +V ++ + ++M R KY++ + +G+V P V+ ++ I+ ++ + F++W P + ++ + P V ++ + M+++ T+I +FS+ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPI-ISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWY 408 The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 417
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bpback to top |