CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 66/239 (27.62%), Postives = 123/239 (51.46%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      N+DC  ++DN A   I    L ++ PT+   N L++ V+S+ T +LR+ G +N DL     +L+P PR HF +  Y+P+    +A      +V ++  +  +  N MV    RT      +Y++   + +G+V P  V  ++  I+ R+ + F++W P   ++ +  + P       ++ +     ML++ TSI   +S+   +++ +  K+AF+  Y
Sbjct:  180 QVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKA-FHESNSVQEITNQCFEPYNQMVKCDPRT-----GRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 412          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_CRIGR (Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 63/239 (26.36%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 61/239 (25.52%), Postives = 127/239 (53.14%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L ++ PT+   N L++ V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +  ++ + P V     ++ +     M+++ T+I  +FS+   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPI-ISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWY 408          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBA1_SCHPO1.404e-2427.62Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA1B_RAT1.404e-2426.36Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub... [more]
TBA1B_PIG1.404e-2426.36Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=... [more]
TBA1B_MOUSE1.404e-2426.36Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b P... [more]
TBA1B_MERUN1.404e-2426.36Tubulin alpha-1B chain OS=Meriones unguiculatus GN... [more]
TBA1B_MACFA1.404e-2426.36Tubulin alpha-1B chain OS=Macaca fascicularis GN=T... [more]
TBA1B_HUMAN1.404e-2426.36Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]
TBA1B_CRIGR1.404e-2426.36Tubulin alpha-1B chain OS=Cricetulus griseus GN=TU... [more]
TBA1B_BOVIN1.404e-2426.36Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2[more]
TBA_TOXGO1.833e-2425.52Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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