CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 62/239 (25.94%), Postives = 124/239 (51.88%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+  ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 62/239 (25.94%), Postives = 124/239 (51.88%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+  ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 62/239 (25.94%), Postives = 124/239 (51.88%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+  ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 61/239 (25.52%), Postives = 126/239 (52.72%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + +  VV+PYNS+L+   L  + D  V+LDN A+  I    L +Q PT+   N L++ V+S+ T +LR+ G +N D+     +L+P PR HF++  Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +  ++ + P V     ++ +     M+++ T+I  +FS+   +++ +  K+AF+  Y
Sbjct:  176 QVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLCSYAPV-ISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 62/239 (25.94%), Postives = 124/239 (51.88%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+  ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 62/239 (25.94%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+S ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T++   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 62/239 (25.94%), Postives = 124/239 (51.88%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ PT+   N L+  ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V ++     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPV-ISAEKAYHEQLSVAEITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 61/239 (25.52%), Postives = 126/239 (52.72%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + +  VV+PYNS+L+   L  + D  V+LDN A+  I    L +Q PT+   N L++ V+S+ T +LR+ G +N D+     +L+P PR HF++  Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +  ++ + P V     ++ +     M+++ T+I  +FS+   +++ +  K+AF+  Y
Sbjct:  176 QVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLCSYAPV-ISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 61/239 (25.52%), Postives = 127/239 (53.14%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L ++ PT+   N L++ V+S+ T +LR+ G +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +  ++ + P V     ++ +     M+++ T+I  +FS+   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 62/239 (25.94%), Postives = 124/239 (51.88%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+LT      ++DC  ++DN A+  I    L ++ P++   N L+  ++S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     + +V D+     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T+I   +++   +++ +  K+AF+  Y
Sbjct:  170 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV-ISAEKAYHEQLSVADITNACFEPANQMVKCDPR-----HGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 402          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBA3_RAT2.395e-2425.94Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE2.395e-2425.94Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3C_HUMAN2.395e-2425.94Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBA1_NAEGR2.395e-2425.52Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA1_DROME2.395e-2425.94Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA1C_BOVIN2.395e-2425.94Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]
TBA1A_PIG2.395e-2425.94Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA13_NAEGR2.395e-2425.52Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA_OXYGR3.127e-2425.52Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA_ONCKE3.127e-2425.94Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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