CX070097
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18 Identity = 60/242 (24.79%), Postives = 123/242 (50.83%), Query Frame = 3 Query: 150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPY-VQTAHRVSGL--------MLASHTSIRHLFSKC-LSQYEKLRKKQAFLDNY 845 S VV+PYN++L+ N+DC ++DN A+ I L + P++ N L++ V+S+ T++LR+ G +N DL +L+P PR H+ + Y P+ ++ ++ + + + + N MV R KY+++ + +G+ P + ++ ++ + N +EW P ++ ++ + P V A GL ML++ T++ +SK +++++ + K+AF+ Y Sbjct: 179 STAVVEPYNAVLSTHSTIENSDCTFLVDNEAVYDICRRNLDIPRPSYDHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPYPRIHYPLISYAPVISGFKS--AHESFKVQLTFQCFEPNNQMVVCDPR-----NGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWY 413
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18 Identity = 58/239 (24.27%), Postives = 121/239 (50.63%), Query Frame = 3 Query: 144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 + S VV+PYNS+L+ L + D V+LDN A+ I L ++ PT+ N L++ V+S+ T +LR+ G +N D+ +L+P P ++ TP + + +V ++ + ++M R KY++ + +G+V P V+ ++ I+ ++ + F++W P + ++ + P V + + + M+++ T+I +FS+ +++ + K+AF+ Y Sbjct: 176 QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYP--SVIIRPSTP----AEKAYHEQLSVAEITNSAFEPASMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDPAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWY 403
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17 Identity = 66/264 (25.00%), Postives = 124/264 (46.97%), Query Frame = 3 Query: 153 DVVVQPYNSLLTLKRLTLNADCVVVLDNTAL----------------------------NRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK-----YISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 DV+ PYNS+L +K L +ADCV+ +DN +L N AV++ H F N++V+ ++ + T++ R+ G +N DL + +L+P P+ H+L++ TPL N+ RRL Q + ++++ + QA Y++ I++G V + + +++R+ + + F+ W + +L P H S L LA++T ++ F + ++ +L KK+A L +Y Sbjct: 184 DVITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHH--KKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNI--------PPRRLDQ---MFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPP---VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHY 429
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.983e-16 Identity = 49/203 (24.14%), Postives = 102/203 (50.25%), Query Frame = 3 Query: 252 IAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 I L ++ P++ N L+S V+S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + V +V + N MV R KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T++ +++ +++ + K+AF+ Y Sbjct: 1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPI-ISAEKAYHEQLAVAEVTSACFEPANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWY 197
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.654e-15 Identity = 58/234 (24.79%), Postives = 112/234 (47.86%), Query Frame = 3 Query: 159 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTT-TLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYV----QTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 VV+PYNS+LT ++D ++DN A+ I L ++ P++ +N L++ S T L + +N DL +L+P PR HF + Y+P+ +A+ +V++V + N MV R KY++ + +G+V P VH ++ ++ V F++ P ++ + + P + A ML++ T+I ++ +++ + K+AF+ Y Sbjct: 181 VVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITAIMLLFDCALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKAS-HESNSVMEVTIVCFEPNNQMVKCDPR-----NGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWY 408
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15 Identity = 64/261 (24.52%), Postives = 120/261 (45.98%), Query Frame = 3 Query: 153 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRI----------------------------AVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEA--SQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 DV+ PYNS+L +K L +ADCV+ +DN +L I A+++ H F N++V+ ++ T++ R+ G +N DL + +L+P P+ H+L++ TPL N+ RRL Q + S + A + Y++ +++G V + + +++R++ + F+ W + +L P H S L LA++T ++ F + ++ +L KK+A L +Y Sbjct: 184 DVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGTTVKPKSLVTSSSGALKKQH--KKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNI--------PPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKPS--LQFVSWNQEGWKTSLCSVPP---VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHY 429
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14 Identity = 51/211 (24.17%), Postives = 103/211 (48.82%), Query Frame = 3 Query: 228 LDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845 +DN A+ I L ++ P + N L++ V+S+ T +LR+ G +N DL +L+P PR HF + Y P+ +A V +V ++ + N MV R KY++ + +G+V V+ ++ +R ++ + F++W P ++ + + P ++ + ML++ TSI + + +++ + K+AF+ Y Sbjct: 1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKA-VHEANSVSEITNACFEPNNQMVKCDPR-----NGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWY 205 The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 417
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bpback to top |