CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 60/242 (24.79%), Postives = 123/242 (50.83%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPY-VQTAHRVSGL--------MLASHTSIRHLFSKC-LSQYEKLRKKQAFLDNY 845
            S  VV+PYN++L+      N+DC  ++DN A+  I    L +  P++   N L++ V+S+ T++LR+ G +N DL     +L+P PR H+ +  Y P+    ++    ++  + +  +  +  N MV    R       KY+++  + +G+  P   + ++  ++ +   N +EW P   ++ ++ + P  V  A    GL        ML++ T++   +SK  +++++ +  K+AF+  Y
Sbjct:  179 STAVVEPYNAVLSTHSTIENSDCTFLVDNEAVYDICRRNLDIPRPSYDHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPYPRIHYPLISYAPVISGFKS--AHESFKVQLTFQCFEPNNQMVVCDPR-----NGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWY 413          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 58/239 (24.27%), Postives = 121/239 (50.63%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L ++ PT+   N L++ V+S+ T +LR+ G +N D+     +L+P P    ++   TP     +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +  ++ + P V  +   + +     M+++ T+I  +FS+   +++ +  K+AF+  Y
Sbjct:  176 QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYP--SVIIRPSTP----AEKAYHEQLSVAEITNSAFEPASMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDPAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWY 403          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17
Identity = 66/264 (25.00%), Postives = 124/264 (46.97%), Query Frame = 3
Query:  153 DVVVQPYNSLLTLKRLTLNADCVVVLDNTAL----------------------------NRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK-----YISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            DV+  PYNS+L +K L  +ADCV+ +DN +L                            N  AV++ H     F   N++V+ ++ + T++ R+ G +N DL  +  +L+P P+ H+L++  TPL      N+          RRL Q   +   ++++  +  QA      Y++   I++G V  + +  +++R+  +  + F+ W     + +L    P     H  S L LA++T ++  F +   ++ +L KK+A L +Y
Sbjct:  184 DVITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHH--KKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNI--------PPRRLDQ---MFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPP---VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHY 429          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.983e-16
Identity = 49/203 (24.14%), Postives = 102/203 (50.25%), Query Frame = 3
Query:  252 IAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            I    L ++ P++   N L+S V+S+ T +LR+ G +N DL     +L+P PR HF +  Y P+ +  +     +  V +V     +  N MV    R       KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML++ T++   +++   +++ +  K+AF+  Y
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPI-ISAEKAYHEQLAVAEVTSACFEPANQMVKCDPR-----HGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWY 197          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.654e-15
Identity = 58/234 (24.79%), Postives = 112/234 (47.86%), Query Frame = 3
Query:  159 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTT-TLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYV----QTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            VV+PYNS+LT      ++D   ++DN A+  I    L ++ P++  +N L++   S  T   L +   +N DL     +L+P PR HF +  Y+P+    +A+     +V++V     +  N MV    R       KY++   + +G+V P  VH     ++ ++ V F++  P   ++ +  + P +      A      ML++ T+I   ++    +++ +  K+AF+  Y
Sbjct:  181 VVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITAIMLLFDCALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKAS-HESNSVMEVTIVCFEPNNQMVKCDPR-----NGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWY 408          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15
Identity = 64/261 (24.52%), Postives = 120/261 (45.98%), Query Frame = 3
Query:  153 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRI----------------------------AVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEA--SQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            DV+  PYNS+L +K L  +ADCV+ +DN +L  I                            A+++ H     F   N++V+ ++   T++ R+ G +N DL  +  +L+P P+ H+L++  TPL      N+          RRL Q  +   S   +   A    + Y++   +++G V  + +  +++R++    + F+ W     + +L    P     H  S L LA++T ++  F +   ++ +L KK+A L +Y
Sbjct:  184 DVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGTTVKPKSLVTSSSGALKKQH--KKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNI--------PPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKPS--LQFVSWNQEGWKTSLCSVPP---VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHY 429          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 51/211 (24.17%), Postives = 103/211 (48.82%), Query Frame = 3
Query:  228 LDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            +DN A+  I    L ++ P +   N L++ V+S+ T +LR+ G +N DL     +L+P PR HF +  Y P+    +A V    +V ++     +  N MV    R       KY++   + +G+V    V+ ++  +R ++ + F++W P   ++ +  + P       ++ +     ML++ TSI   + +   +++ +  K+AF+  Y
Sbjct:    1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKA-VHEANSVSEITNACFEPNNQMVKCDPR-----NGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWY 205          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBA_GLOLA1.503e-1824.79Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA1_STYLE2.564e-1824.27Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBE_MOUSE8.249e-1725.00Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBA_OCTVU6.983e-1624.14Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBA_AJECA2.654e-1524.79Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBE_HUMAN3.466e-1524.52Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBAA_PNECA2.246e-1424.17Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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