CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB2_TRIVI (Tubulin beta-2 chain OS=Trichoderma viride GN=tub2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.552e-34
Identity = 81/234 (34.62%), Postives = 132/234 (56.41%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP +   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT    A+  R  TV ++ +++   KN+M +S  R       +Y++  +I +G+V   +V + ++ ++ +    F+EW P +IQ AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLNNPAYGDLNYLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SPGAHSFRAVTVPELTQQMFDPKNMMAASDFR-----NGRYLTCCSIFRGKVAMKEVEDQMRNVQNKNSTYFVEWIPNNIQTALCAIPP---RGLKMSSTFIGNSTSIQELFKRVGEQFSAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB2_TRIVE (Tubulin beta-2 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.552e-34
Identity = 81/234 (34.62%), Postives = 132/234 (56.41%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP +   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT    A+  R  TV ++ +++   KN+M +S  R       +Y++  +I +G+V   +V + ++ ++ +    F+EW P +IQ AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPAYGDLNYLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SPGAHSFRAVTVPELTQQMFDPKNMMAASDFR-----NGRYLTCCSIFRGKVAMKEVEDQMRNVQNKNSTYFVEWIPNNIQTALCAIPP---RGLKMSSTFIGNSTSIQELFKRVGEQFSAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_YEAST (Tubulin beta chain OS=Saccharomyces cerevisiae GN=TUB2 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.334e-34
Identity = 79/234 (33.76%), Postives = 134/234 (57.26%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            +TSD VV+PYN+ L++ +L  ++D    +DN AL  I    L L  P++   N+LVS+VMS  TT+LRYPG +N+DL  L  +L+P PR HF M GY PLT     +  R  TV ++ +++   KN+M ++  R       +Y+++    +G+V   +V + + +++ +    F+EW P ++Q A+   +P       ++   +A+ TSI+ LF +   Q+  + K++AFL  Y
Sbjct:  174 KTSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQS-FRSLTVPELTQQMFDAKNMMAAADPR-----NGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAP---QGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_PHANO (Tubulin beta chain OS=Phaeosphaeria nodorum GN=tubA PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.334e-34
Identity = 80/234 (34.19%), Postives = 132/234 (56.41%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  TV ++ +++   KN+M +S  R       +Y++     +G+V   +V + ++ ++ +    F+EW P ++Q AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENSDETFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVTVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSVPP---RGLKMSATFVGNSTSIQELFKRIGDQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.334e-34
Identity = 80/234 (34.19%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  TV ++ +++   KN+M +S  R       +Y++   I +G+V   +V + ++ ++ +    F+EW P ++Q AL    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVTVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP---RGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.334e-34
Identity = 78/234 (33.33%), Postives = 134/234 (57.26%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP++   N LVS VMS  +T+LR+PG +N+DL  L  +++P PR HF M G+ PLT    A+  R  TV ++ ++++  KN+M +S  R       +Y++   I +G+V   +V + ++ ++ +    F+EW P +IQ A +   P      ++S   + + T+I+ +F +   Q+  + ++QAFL  Y
Sbjct:  176 KVSDTVVEPYNATLSMHQLVENSDKTFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVSTSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SPGAHSFRAVTVPELTQQMMDPKNMMAASDFR-----NGRYLTCSTIFRGKVAMKEVEDQMRTVQNKNSAYFVEWIPNNIQTACALSPP---RGLKISSTFVGNSTAIQEIFRRVGEQFSAMFRRQAFLHWY 400          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.354e-34
Identity = 80/234 (34.19%), Postives = 132/234 (56.41%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  TV ++ +++   KN+M +S  R       +Y++     +G+V   +V + ++ ++ +    F+EW P ++Q AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENSDETFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVTVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP---RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_ASPPA (Tubulin beta chain OS=Aspergillus parasiticus GN=benR PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.354e-34
Identity = 81/234 (34.62%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  ++D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  +V ++ +++   KN+M +S  R       +Y++   I +G+V   +V + ++ I+ +    F+EW P +IQ AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVSVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAIFRGKVSMKEVEDQMRNIQSKNQTYFVEWIPNNIQTALCSIPP---RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_ASPOR (Tubulin beta chain OS=Aspergillus oryzae GN=benA56 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.354e-34
Identity = 81/234 (34.62%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  ++D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  +V ++ +++   KN+M +S  R       +Y++   I +G+V   +V + ++ I+ +    F+EW P +IQ AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVSVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAIFRGKVSMKEVEDQMRNIQSKNQTYFVEWIPNNIQTALCSIPP---RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_ASPFL (Tubulin beta chain OS=Aspergillus flavus PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.354e-34
Identity = 81/234 (34.62%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  ++D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  +V ++ +++   KN+M +S  R       +Y++   I +G+V   +V + ++ I+ +    F+EW P +IQ AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVSVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAIFRGKVSMKEVEDQMRNIQSKNQTYFVEWIPNNIQTALCSIPP---RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBB2_TRIVI2.552e-3434.62Tubulin beta-2 chain OS=Trichoderma viride GN=tub2... [more]
TBB2_TRIVE2.552e-3434.62Tubulin beta-2 chain OS=Trichoderma virens PE=2 SV... [more]
TBB_YEAST3.334e-3433.76Tubulin beta chain OS=Saccharomyces cerevisiae GN=... [more]
TBB_PHANO3.334e-3434.19Tubulin beta chain OS=Phaeosphaeria nodorum GN=tub... [more]
TBB_PESMI3.334e-3434.19Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB1_TRIVI3.334e-3433.33Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB_COCHE4.354e-3434.19Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]
TBB_ASPPA4.354e-3434.62Tubulin beta chain OS=Aspergillus parasiticus GN=b... [more]
TBB_ASPOR4.354e-3434.62Tubulin beta chain OS=Aspergillus oryzae GN=benA56... [more]
TBB_ASPFL4.354e-3434.62Tubulin beta chain OS=Aspergillus flavus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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