CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_TRIRU (Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.161e-33
Identity = 78/229 (34.06%), Postives = 132/229 (57.64%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFL 836
            SD VV+PYN+ L++ +L  ++D    +DN AL  I +  L L NP++   N LVS VMS  +T+LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A   R  +V ++ +++   KN+M ++  R+      +Y++   I +G+V   +V + ++ I+ +    F+EW P ++Q AL    P      ++S   + + TSI+ LF +   Q+  + +K+AFL
Sbjct:  176 SDTVVEPYNATLSIHQLVEHSDETFCIDNEALYNICMRTLKLTNPSYGDLNHLVSAVMSGVSTSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRNAYSFRAVSVPELTQQMFDPKNMMAATDFRS-----GRYLTCSAIFRGKVSMKEVEDQMRNIQNKNSAYFVEWIPNNVQTALCSIPP---RGLQMSSTFVGNSTSIQELFKRVGDQFTAMFRKKAFL 395          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_CEPAC (Tubulin beta chain OS=Cephalosporium acremonium GN=TUB2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.161e-33
Identity = 80/234 (34.19%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  ++D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  +V ++ +++   KN+M +S  R       +Y++   I +G+V   +V + ++ ++ +    F+EW P +IQ AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICMRTLKLSNPSYGDLNYLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVSVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAIFRGKVAMKEVEDQMRNVQSKNSSYFVEWIPNNIQTALCAIPP---RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.161e-33
Identity = 79/232 (34.05%), Postives = 129/232 (55.60%), Query Frame = 3
Query:  150 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            SD VV+PYN+ L++ +L  N+D    +DN AL  I    L L  PT+   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF MTG+ PLT  R +   R  TV ++ +++   KN+M +S  R       +Y+++  + +G+V   +V E +Q ++ +    F+EW P ++   LS +        +++   L + T+I+ LF +    +  + K++AFL  Y
Sbjct:  176 SDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNHLVSFVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMTGFAPLTA-RGSQQYRAVTVPELTQQMFDAKNMMAASDPR-----HGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNV---LSAQCDIPPRGVKMAVTFLGNSTAIQELFKRVSDHFTAMFKRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.822e-33
Identity = 77/234 (32.91%), Postives = 132/234 (56.41%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L +P +   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF + G+ PLT  + ++  R  TV ++ +++   KN+M +S  R       +Y+++  I +G V   +V + +  ++++    F+EW P ++Q AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLPDPGYGDLNHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFIVGFAPLT-SKGSHSFRSLTVPELTQQMFDAKNMMAASDPR-----HGRYLTVAAIFRGRVSMKEVEDQMHSVQQKNSSYFVEWIPNNVQTALCSIPP---RGLKMSSTFIGNSTSIQELFKRVGDQFSAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.822e-33
Identity = 78/234 (33.33%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP++   N LVS VMS  T +LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  +V ++ +++   KN+M +S  R       +Y++   I +G+V   +V + ++ ++ +    F+EW P ++Q AL    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTVSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHHFRAVSVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP---RGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.686e-33
Identity = 79/234 (33.76%), Postives = 132/234 (56.41%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  +V ++ +++   KN+M +S  R       +Y++   I +G+V    V + ++ ++ +    F+EW P ++Q AL    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVSVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAIFRGKVAMKDVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP---RGLKMSSTFVGNATAIQELFKRVGEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.211e-33
Identity = 79/234 (33.76%), Postives = 130/234 (55.56%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I    L LQ PT+   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R +   R  TV ++  ++   KN+M +S  R       +Y+++    +G+V   +V E++  ++ +    F+EW P ++Q A    +P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLQTPTYGDLNHLVSIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTA-RGSQQYRAVTVPELTSQMFDAKNMMAASDPR-----HGRYLTVAAYFRGKVSMKEVEENMLSVQSKNSNYFVEWIPNNVQTAHCDIAP---RGLKMSVTFIGNSTAIQDLFKRIADQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_PENDI (Tubulin beta chain OS=Penicillium digitatum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.401e-32
Identity = 76/234 (32.48%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  ++D    +DN AL  I +  L L  P++   N LVS VMS  TT+LR+PG +N+DL  L  +++P PR HF M G+ PLT  R  +  R+ +V ++ +++   KN+M +S  R       +Y++   + +G++   +V + ++ I+ +    F+EW P ++Q AL    P      ++S   + + TSI+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICMRTLKLSQPSYGDLNHLVSAVMSGVTTSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGGSSYRQVSVPELTQQMFDPKNMMAASDFR-----NGRYLTCSALFRGKISMKEVEDQMRNIQNKNQSYFVEWIPNNVQTALCSVPP---RGLKMSSTFVGNSTSIQELFKRVGDQFAAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.401e-32
Identity = 79/234 (33.76%), Postives = 131/234 (55.98%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I +  L L NP++   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G+ PLT  R A+  R  +V ++ +++   KN+M +S  R       +Y++   I +G+V    V + ++ +  +    F+EW P ++Q AL    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLT-SRGAHSFRAVSVPELTQQMFDPKNMMAASDFR-----NGRYLTCSAIFRGKVAMKDVEDQMRNVLNKNSSYFVEWIPNNVQTALCSIPP---RGLKMSFTFVGNSTAIQELFKRVGEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.389e-32
Identity = 77/238 (32.35%), Postives = 139/238 (58.40%), Query Frame = 3
Query:  147 TSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVI--RKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYV---QTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            +S+VVVQ YN++L L+RL  ++D  VV DN +L  I+ +     N     TN L+ST++S+ T ++R+P YM + +  + ++LIP+P  HFL   +TP T +   + I  +  +  DVM  LL   N +VS+       +   Y ++ N I G V+P Q+  ++ ++++R  + F  W  +++ V + R+SPY+      + VSG+ML++ +++ ++F    + ++K+  K AFL+NY
Sbjct:  177 SSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKGHSSYDVMLDLLDPSNSLVST-----AMNNPTYFNVYNTIIGNVEPRQISRAMTKLQQR--IKFPSWSSSAMHVNIGRRSPYLPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNY 407          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBB_TRIRU2.161e-3334.06Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=... [more]
TBB_CEPAC2.161e-3334.19Tubulin beta chain OS=Cephalosporium acremonium GN... [more]
TBB1_SUIBO2.161e-3334.05Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB_PNECA2.822e-3332.91Tubulin beta chain OS=Pneumocystis carinii GN=TUB-... [more]
TBB_NEUCR2.822e-3333.33Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB2_COLGL3.686e-3333.76Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB_MELLI8.211e-3333.76Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB_PENDI1.401e-3232.48Tubulin beta chain OS=Penicillium digitatum GN=TUB... [more]
TBB2_COLGR1.401e-3233.76Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBG_YEAST2.389e-3232.35Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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