CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.389e-32
Identity = 78/234 (33.33%), Postives = 128/234 (54.70%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I    L L  PT+   N L+S VMS  TT LR+PG +N+DL  L  +++P PR HF M G  PLT  R +   R  TV ++ +++   KN+M +S  R       +Y+++  + +G+V   +V E +Q ++ +    F+EW P ++  A     P      +++   L + T+I+ LF +   Q+  + K++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTTPTYGDLNHLISIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGVCPLTA-RGSQQYRAVTVPELTQQMFDAKNMMAASDPR-----HGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLTAQCDIPP---RGCKMAVTFLGNSTAIQELFKRVNDQFAAMFKRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_ENTDO (Tubulin beta chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.120e-32
Identity = 77/234 (32.91%), Postives = 129/234 (55.13%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I++  L L NPT+   N LVS  MS  TT LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  +V D+ ++L   KN+M +   R       +Y+++  + +G++   +V E +  I+ +    F+EW P +++ A+    P   T   +S   + + T+I+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYDISLRTLKLPNPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT-SRGSQDYRMHSVSDLTQQLFDAKNMMTACDPR-----HGRYLTVAAVFRGKMSMKEVDEQMFSIQNKMSPYFVEWIPNNVKTAVCDIPP---TGLEMSATFIGNSTAIQEIFKRISEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.075e-32
Identity = 78/234 (33.33%), Postives = 125/234 (53.42%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN  L++ +L  NAD V  +DN AL  I    L    P +   N LVS VMS  T++LR+PG +N+DL  L  +L+P PR HF M GY PL+ +      R  TV D+ +++   KN+M     R       +Y++     +G+V   +V E +  I+ +    FI+W P +I+ ++   +P   T   +S   + + T+I+ +F +  S +  + K++AFL  Y
Sbjct:  174 KVSDTVVEPYNCTLSVHQLVENADAVFCIDNEALYNICYNTLKKPEPAYPDLNKLVSGVMSGITSSLRFPGQLNSDLRKLAVNLVPFPRLHFFMIGYAPLSAD-GVTAYRAKTVADLTKQMFDPKNMMADCDPR-----NGRYLTASAYFRGKVSTKEVEEQMDAIQTKNSGQFIDWIPNAIKASVCDVAP---TGETMSAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB2_HOMAM (Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.075e-32
Identity = 77/234 (32.91%), Postives = 127/234 (54.27%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I    L LQNPT+   N LVS  MS  TT LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  TV ++ +++   KN+M +   R       +Y+++  I +G +   +V + +  I+ +    F+EW P +++ A+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  179 KVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLQNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-RGSQQYRALTVPELTQQMFDAKNMMAACDPR-----HGRYLTVAAIFRGRMSMREVDDQMYNIQNKNSSFFVEWIPNNVKTAVCDIPP---RGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWY 403          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.075e-32
Identity = 78/234 (33.33%), Postives = 131/234 (55.98%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            E SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L NP+F   N L+ST MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  T+ ++ +++   +N+M ++  R       +Y++   + +G++   +V + +  ++ +    F+EW P +++ ++    P   T   +S   + + TSI+ +F +   Q+  + K++AFL  Y
Sbjct:  174 EGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRSLTIPELTQQMWDARNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---TGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.322e-32
Identity = 76/234 (32.48%), Postives = 128/234 (54.70%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N+D    +DN AL  I  + L L  PT+   N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF M G++PLT  R +   R  T+ ++ ++   +KN+M +   R       +Y++     +G+V    V + +Q  +++    F+EW P ++Q A     P      ++S   + + T+I+ +F +   Q+  + K++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYNICFKTLKLNAPTYGDLNHLVSLVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFSPLTA-RGSQSYRAVTIPEITQQAFDSKNMMTACDTRL-----GRYLTCAAYFRGKVSMKDVEDQMQSFQQKHSTQFVEWIPNNVQTAQCDIPP---RGLKMSVTFIGNSTAIQDVFKRIAEQFSAMFKRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.322e-32
Identity = 78/234 (33.33%), Postives = 124/234 (52.99%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN  L++ +L  NAD V  +DN AL  I    L    P +   N LVS VMS  T++LR+PG +N+DL  L  +L+P PR HF M GY PL+ +      R  TV D+ +++   KN+M     R       +Y++     +G V   +V E +  I+ +    FI+W P +I+ ++   +P   T   +S   + + T+I+ +F +  S +  + K++AFL  Y
Sbjct:  174 KVSDTVVEPYNCTLSVHQLVENADAVFCIDNEALYNICYNTLKKPEPAYPDLNKLVSGVMSGITSSLRFPGQLNSDLRKLAVNLVPFPRLHFFMIGYAPLSAD-GVTAYRAKTVADLTKQMFDPKNMMADCDPR-----NGRYLTASAYFRGHVSTKEVEEQMDAIQTKNSGQFIDWIPNAIKASVCDVAP---TGETMSAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.322e-32
Identity = 77/234 (32.91%), Postives = 131/234 (55.98%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD V+VLDN AL  I    L L NP+F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  +V ++ +++   KN+M ++  R       +Y++   + +G++   +V E +  ++ +    F+EW P +++  +    P   T  +++   + + TSI+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRILKLSNPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRTLSVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 76/234 (32.48%), Postives = 131/234 (55.98%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L NPTF   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +      +V ++ +++   KN+M ++  R       +Y++   + +G++   +V E +  ++ +    F+EW P +++ ++   +P   T  +++   + + TSI+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYSALSVPELTQQMWDAKNMMCAADPR-----HGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398          
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB4_CHICK (Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 76/234 (32.48%), Postives = 127/234 (54.27%), Query Frame = 3
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I    L L  PT+   N LVS  MS  TT+LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  TV ++ +++   KN+M +   R       +Y+++  + +G +   +V E +  I+ +    F+EW P +++VA+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT-RRGSQQYRALTVPELTQQMFDAKNMMAACDPR-----HGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP---RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 398          
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBB_PLESA2.389e-3233.33Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]
TBB_ENTDO3.120e-3232.91Tubulin beta chain OS=Enteroctopus dofleini PE=2 S... [more]
TBB_PORYE4.075e-3233.33Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 ... [more]
TBB2_HOMAM4.075e-3232.91Tubulin beta-2 chain OS=Homarus americanus PE=2 SV... [more]
TBB1_SOYBN4.075e-3233.33Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB_USTMA5.322e-3232.48Tubulin beta chain OS=Ustilago maydis GN=UM05828 P... [more]
TBB_PORPU5.322e-3233.33Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBB1_PEA5.322e-3232.91Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB9_ARATH6.951e-3232.48Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB4_CHICK6.951e-3232.48Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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