CX070097

Overview
NameCX070097
Unique NameCX070097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 76/234 (32.48%), Postives = 127/234 (54.27%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I    L L  PT+   N LVS  MS  TT+LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  TV ++ +++   KN+M +   R       +Y+++  + +G +   +V E +  I+ +    F+EW P +++VA+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-RGSQQYRALTVPELTQQMFDAKNMMAACDPR-----HGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP---RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 76/234 (32.48%), Postives = 127/234 (54.27%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I    L L  PT+   N LVS  MS  TT+LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  TV ++ +++   KN+M +   R       +Y+++  + +G +   +V E +  I+ +    F+EW P +++VA+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-RGSQQYRALTVPELTQQMFDAKNMMAACDPR-----HGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP---RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 76/234 (32.48%), Postives = 127/234 (54.27%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I    L L  PT+   N LVS  MS  TT+LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  TV ++ +++   KN+M +   R       +Y+++  + +G +   +V E +  I+ +    F+EW P +++VA+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-RGSQQYRALTVPELTQQMFDAKNMMAACDPR-----HGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP---RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 76/234 (32.48%), Postives = 127/234 (54.27%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I    L L  PT+   N LVS  MS  TT+LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  TV ++ +++   KN+M +   R       +Y+++  + +G +   +V E +  I+ +    F+EW P +++VA+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-RGSQQYRALTVPELTQQMFDAKNMMAACDPR-----HGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP---RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 76/234 (32.48%), Postives = 127/234 (54.27%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  N D    +DN AL  I    L L  PT+   N LVS  MS  TT+LR+PG +N DL  L  +++P PR HF M G+ PLT  R +   R  TV ++ +++   KN+M +   R       +Y+++  + +G +   +V E +  I+ +    F+EW P +++VA+    P      ++S   + + T+I+ LF +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTA-RGSQQYRALTVPELTQQMFDAKNMMAACDPR-----HGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPP---RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.078e-32
Identity = 78/234 (33.33%), Postives = 129/234 (55.13%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  PTF   N L+S VMS  T  LR+PG +N DL  L  +LIP PR HF M G+TPLT  R +   R  TV ++ +++   KN+M ++  R       +Y++   + +G +   +V E +  ++ +    F+EW P +++ ++    P      ++S   + + T+I+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPR-----HGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.078e-32
Identity = 78/234 (33.33%), Postives = 129/234 (55.13%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  PTF   N L+S VMS  T  LR+PG +N DL  L  +LIP PR HF M G+TPLT  R +   R  TV ++ +++   KN+M ++  R       +Y++   + +G +   +V E +  ++ +    F+EW P +++ ++    P      ++S   + + T+I+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPR-----HGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.078e-32
Identity = 78/234 (33.33%), Postives = 129/234 (55.13%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  PTF   N L+S VMS  T  LR+PG +N DL  L  +LIP PR HF M G+TPLT  R +   R  TV ++ +++   KN+M ++  R       +Y++   + +G +   +V E +  ++ +    F+EW P +++ ++    P      ++S   + + T+I+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPR-----HGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.078e-32
Identity = 78/234 (33.33%), Postives = 129/234 (55.13%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  PTF   N L+S VMS  T  LR+PG +N DL  L  +LIP PR HF M G+TPLT  R +   R  TV ++ +++   KN+M ++  R       +Y++   + +G +   +V E +  ++ +    F+EW P +++ ++    P      ++S   + + T+I+ +F +   Q+  + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPR-----HGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWY 398
[Close]
BLAST of CX070097 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 77/234 (32.91%), Postives = 130/234 (55.56%), Query Frame = 3 
Query:  144 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLQNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNY 845
            + SD VV+PYN++L++ +L  N+D    +DN AL  I    L L  PT    N LVS VMS  TT LR+PG +N+DL  L  +++P PR HF   G+ PLT  R ++  R  TV ++  ++   KN+M +S  R       +Y+++    +G+V   +V + +  I+++    F+EW P ++Q A    +P      ++S   + ++TSI+ LF +    ++ + +++AFL  Y
Sbjct:  174 KVSDTVVEPYNAVLSVHQLVENSDETFCIDNEALYDICFRTLKLSAPTHGDLNGLVSIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFTVGFAPLTA-RGSSQYRAVTVAELTAQMFDAKNMMAASDPR-----HGRYLTVAAYFRGKVSMKEVEDQMVSIQQKNSQYFVEWIPNNVQSAHCEVAP---RGLKMSVTFIGNNTSIQELFKRVGDHFDVMFRRRAFLHWY 398
The following BLAST results are available for this feature:
BLAST of CX070097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBB3_RAT6.951e-3232.48Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3... [more]
TBB3_MOUSE6.951e-3232.48Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1... [more]
TBB3_MACFA6.951e-3232.48Tubulin beta-3 chain OS=Macaca fascicularis GN=TUB... [more]
TBB3_HUMAN6.951e-3232.48Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1... [more]
TBB3_BOVIN6.951e-3232.48Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 S... [more]
TBB_POLAG9.078e-3233.33Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB_CHLRE9.078e-3233.33Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB_CHLIN9.078e-3233.33Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB1_VOLCA9.078e-3233.33Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB_USTVI1.186e-3132.91Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070097 ID=CX070097; Name=CX070097; organism=Citrus sinensis; type=EST; length=848bp
TTTAAGTGAAATATTTCACTCATGAATTTTGAAGTTTACTGTTTGGTTAT
ATGAATCTTATTTGGATGAATCCATAAGTACTCTGGAAAACAAAAAGACA
AATAAAATGACCGCTCAGTAGGGGCAGATGAACTATGCAGATGGAGACAA
GTGATGTGGTGGTCCAACCGTACAACTCTCTCTTGACACTCAAGCGACTG
ACCCTAAATGCTGATTGTGTTGTTGTTCTTGACAATACTGCACTGAATCG
AATTGCTGTGGAGCGCCTACATCTGCAAAATCCTACATTTGCTCAAACTA
ATTCATTGGTTTCCACTGTAATGTCTGCAAGCACAACCACATTGAGGTAT
CCAGGATACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTCTAATTCC
AACGCCGAGATGCCATTTTCTCATGACAGGATACACACCCCTAACTGTGG
AACGTCAAGCTAATGTGATCCGTAAAACTACTGTACTAGATGTTATGAGA
AGACTGCTGCAGACCAAAAATATCATGGTTTCTTCTTACGCTCGTACAAA
AGAAGCTAGTCAGGCTAAGTACATTTCTATATTGAATATCATTCAAGGAG
AGGTGGACCCTACTCAGGTGCATGAAAGTTTACAGAGGATTCGTGAAAGA
AAGCTTGTCAACTTTATTGAGTGGGGCCCTGCAAGTATTCAGGTTGCTCT
CTCTAGAAAGTCGCCATACGTTCAAACTGCACATAGGGTTAGTGGTCTCA
TGCTGGCAAGCCATACTAGTATCAGGCATCTCTTCAGCAAATGTTTGAGC
CAATATGAGAAGTTGCGAAAAAAGCAAGCCTTTCTTGACAACTACCGA
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