CX069794

Overview
NameCX069794
Unique NameCX069794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  117 AGELRLHRDISELNLPKTCSI-TFPNGKDD---LMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL-REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESN 524
            A   RL +++ E+   + C +  F N + D   L+ ++  I PD   Y  G F         YP + PK+  KTK+YHPNID +G VCL ++  E+WKP    + +I  L  L   P  E PL  + A     + K F  N
Sbjct:    2 AASRRLMKELEEI---RKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKN 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  117 AGELRLHRDISELNLPKTCSI-TFPNGKDD---LMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL-REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESN 524
            A   RL +++ E+   + C +  F N + D   L+ ++  I PD   Y  G F         YP + PK+  KTK+YHPNID +G VCL ++  E+WKP    + +I  L  L   P  E PL  + A     + K F  N
Sbjct:    2 AASRRLMKELEEI---RKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKN 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  117 AGELRLHRDISELNLPKTCSI-TFPNGKDD---LMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL-REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESN 524
            A   RL +++ E+   + C +  F N + D   L+ ++  I PD   Y  G F         YP + PK+  KTK+YHPNID +G VCL ++  E+WKP    + +I  L  L   P  E PL  + A     + K F  N
Sbjct:    2 AASRRLMKELEEI---RKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKN 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12
Identity = 45/135 (33.33%), Postives = 65/135 (48.15%), Query Frame = 3
Query:  114 SAGELRLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPN-YEDPLNHEAAAVLRDNPK 509
            SA   R+ R+++ELN+  P  CS   P G +        I P    Y GG F         YP + PK+  KT++YH N+D  G++ +NILR+ W P L I  ++  +  +F +P  Y   L   A   L D  K
Sbjct:   35 SASGKRIQREMAELNIDPPPDCSAG-PKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREK 168          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  195 KDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED--------WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 497
            +++L  ++V ++ P + +Y GG F       P YP+E PK+   ++++HPNI  +G +C++IL  D        W P   I T++  +  LF +PN + P N +AA   R
Sbjct:   27 ENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYR 136          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 3
Query:  117 AGELRLHRDISELNLPKTCSITFPNGKDD-LMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED-WKPVLNINTIIYGLFHLFTQPNYEDPLNHE-AAAVLRDNPKLFES 521
            A   RL R++S+L   K  ++      D+ L+ +   + P++  Y  G F       P YP   PK+  KTK+YHPN+D +G VCL I+  D WKP      ++  L  +   P  E PL  + A   +R++ K  ++
Sbjct:    2 AATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLVPEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKT 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 3
Query:  246 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            + GGTF     ++  YP  APKV+  TK+YHPN+D    + L+IL++ W P L I T++  +  L   PN +DPL ++     + N
Sbjct:   48 FEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTN 133          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 42/134 (31.34%), Postives = 65/134 (48.51%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL----REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLF 515
            RL +++  L +     IT    KD + +    I       Y  G F     +   YP E P+V+  T +YHPNID  G +CL+IL    +  W+P LNI T++  +  L  +PN +DPL  + ++  + N   F
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAF 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  291 YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 485
            YP+ AP VK  T  +HPN+D  GN+CL+IL++ W  + ++ TI+  L  L  +PN E PLN  AA
Sbjct:   89 YPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAA 153          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  246 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 485
            + G  +  +   S  YP + PKVK +T  +HPN+D+ GN+CL+IL++ W    ++ TI+  +  L  +PN   PLN +AA
Sbjct:   79 FEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAA 158          
The following BLAST results are available for this feature:
BLAST of CX069794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2L3_MOUSE3.233e-1233.33Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN3.233e-1233.33Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN3.233e-1233.33Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
COP10_ARATH4.222e-1233.33Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC_ASFK57.202e-1231.82Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC84_DROME7.202e-1231.16Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UE2NL_HUMAN9.406e-1237.21Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2T_MOUSE1.604e-1131.34Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBE2C_XENLA1.604e-1146.15Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBC20_ARATH1.604e-1137.50Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G10-N20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069794 ID=CX069794; Name=CX069794; organism=Citrus sinensis; type=EST; length=794bp
ATCCCCTGCAGCTTAACTCTTAAGCAGGAAAAATGATTAAGCTGTTCAAA
GTCAAGGAGAAGCAAAGGGAAAATGCCGAAAATGCCAATGGGAAGACACC
TGTCAAGAAGCAAAGTGCTGGAGAATTGCGTCTTCATAGAGACATCAGTG
AACTGAACCTACCCAAAACTTGCAGCATAACATTTCCCAATGGCAAGGAT
GACTTGATGAACTTCGAGGTTTCCATTAGGCCTGACGAAGGATATTATGT
AGGTGGTACATTTGTGTTTACTTTCCAAGTATCTCCCATCTACCCTCATG
AGGCACCAAAGGTCAAATGCAAGACAAAGGTTTACCACCCCAATATCGAC
CTGGAGGGAAACGTCTGCCTCAACATTTTAAGAGAAGACTGGAAACCGGT
TCTGAATATAAACACCATCATTTATGGACTCTTCCATCTTTTCACGCAAC
CCAATTATGAGGATCCCCTCAATCATGAAGCAGCAGCTGTTTTAAGGGAT
AACCCAAAACTGTTTGAATCCAATGTTAGAAGAGCAATGGCTGGTGGATA
TGTGGGGCAAACCTTCTTCATTCGGTGCATATAATTGCTTTTGCCTGGAA
ATGCATGTTGCTTTGAAGGTAAGGAGCTGTAAATTTGGTCGCAGGGCTGC
TTCAATTTCTAGTAATGTGTTGGGACAAAAAATTCTAAGAATCATGCAAA
GGGAGTCAGAATGTTTGTATGCTGCTGTAACTTTGTTGTGTGTTTGTGAT
ATTGGCTGAGAACAAAATTATTTCCCTTAAAAAAAAAAAAAAAA
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