CX069794

Overview
NameCX069794
Unique NameCX069794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 3
Query:  126 LRLHRDISELNLPKTCSITFPNG---KDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED-------------WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            L L R ++ELN  K     F  G    +DL  +EV I  P +  Y GG F         YP   PK+K  T+++HPN+D  G+VC++IL E              W P+  + TI+  +  +   PN + P N +AA   R++
Sbjct:    8 LLLRRQLAELN--KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRED 148          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 3
Query:  126 LRLHRDISELNLPKTCSITFPNG---KDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED-------------WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            L L R ++ELN  K     F  G    +DL  +EV I  P +  Y GG F         YP   PK+K  T+++HPN+D  G+VC++IL E              W P+  + TI+  +  +   PN + P N +AA   R++
Sbjct:    8 LLLRRQLAELN--KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRED 148          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 3
Query:  126 LRLHRDISELNLPKTCSITFPNG---KDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED-------------WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            L L R ++ELN  K     F  G    +DL  +EV I  P +  Y GG F         YP   PK+K  T+++HPN+D  G+VC++IL E              W P+  + TI+  +  +   PN + P N +AA   R++
Sbjct:    8 LLLRRQLAELN--KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRED 148          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 3
Query:  126 LRLHRDISELNLPKTCSITFPNG---KDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED-------------WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            L L R ++ELN  K     F  G    +DL  +EV I  P +  Y GG F         YP   PK+K  T+++HPN+D  G+VC++IL E              W P+  + TI+  +  +   PN + P N +AA   R++
Sbjct:    8 LLLRRQLAELN--KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRED 148          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2S_DROYA (Ubiquitin-conjugating enzyme E2 S OS=Drosophila yakuba GN=GE15576 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 37/120 (30.83%), Postives = 57/120 (47.50%), Query Frame = 3
Query:  138 RDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVL 494
            R++ E+       I     + D+ + +  I    G  Y  G F     ++  +P   PK    TK++HPN+   G +C+N L++DWKP L I  I+  +  L   PN E  LN EA  +L
Sbjct:   21 RELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKML 140          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 37/120 (30.83%), Postives = 57/120 (47.50%), Query Frame = 3
Query:  138 RDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVL 494
            R++ E+       I     + D+ + +  I    G  Y  G F     ++  +P   PK    TK++HPN+   G +C+N L++DWKP L I  I+  +  L   PN E  LN EA  +L
Sbjct:   21 RELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKML 140          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  195 KDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED--------WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 497
            ++++  ++V ++ P +  Y GG F       P YP+E P++   ++++HPNI  +G VC++IL  D        W PV  I+TI+  +  L  +PN + P N +AA   R
Sbjct:   27 ENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYR 136          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 3
Query:  246 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI-DLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAA-VLRD 500
            Y GG FV   +V   YP + PK++  TKVYHPNI  + G +CL+IL+  W PV+ + + +  L  L   P   DP + E A   LRD
Sbjct:   47 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRD 133          
The following BLAST results are available for this feature:
BLAST of CX069794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2G1_RAT6.097e-1132.17Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE6.097e-1132.17Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_MACFA6.097e-1132.17Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UB2G1_HUMAN6.097e-1132.17Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBE2S_DROYA7.963e-1130.83Ubiquitin-conjugating enzyme E2 S OS=Drosophila ya... [more]
UBE2S_DROER7.963e-1130.83Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBC_ASFP47.963e-1131.82Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC1_YEAST7.963e-1141.38Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12G10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G10-N20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069794 ID=CX069794; Name=CX069794; organism=Citrus sinensis; type=EST; length=794bp
ATCCCCTGCAGCTTAACTCTTAAGCAGGAAAAATGATTAAGCTGTTCAAA
GTCAAGGAGAAGCAAAGGGAAAATGCCGAAAATGCCAATGGGAAGACACC
TGTCAAGAAGCAAAGTGCTGGAGAATTGCGTCTTCATAGAGACATCAGTG
AACTGAACCTACCCAAAACTTGCAGCATAACATTTCCCAATGGCAAGGAT
GACTTGATGAACTTCGAGGTTTCCATTAGGCCTGACGAAGGATATTATGT
AGGTGGTACATTTGTGTTTACTTTCCAAGTATCTCCCATCTACCCTCATG
AGGCACCAAAGGTCAAATGCAAGACAAAGGTTTACCACCCCAATATCGAC
CTGGAGGGAAACGTCTGCCTCAACATTTTAAGAGAAGACTGGAAACCGGT
TCTGAATATAAACACCATCATTTATGGACTCTTCCATCTTTTCACGCAAC
CCAATTATGAGGATCCCCTCAATCATGAAGCAGCAGCTGTTTTAAGGGAT
AACCCAAAACTGTTTGAATCCAATGTTAGAAGAGCAATGGCTGGTGGATA
TGTGGGGCAAACCTTCTTCATTCGGTGCATATAATTGCTTTTGCCTGGAA
ATGCATGTTGCTTTGAAGGTAAGGAGCTGTAAATTTGGTCGCAGGGCTGC
TTCAATTTCTAGTAATGTGTTGGGACAAAAAATTCTAAGAATCATGCAAA
GGGAGTCAGAATGTTTGTATGCTGCTGTAACTTTGTTGTGTGTTTGTGAT
ATTGGCTGAGAACAAAATTATTTCCCTTAAAAAAAAAAAAAAAA
back to top