CX069794

Overview
NameCX069794
Unique NameCX069794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:70..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.639e-22
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   81 NANGKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 485
            +A      ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC T+++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EAA
Sbjct:   20 SATASDSTRRVSVRDRLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 162          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.677e-22
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  150 ELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 485
            E NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N+ DPLN EAA
Sbjct:   45 EANLPWTCKVHFPD-PNKLHCFQLTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAA 162          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.309e-21
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  105 KKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 485
            ++ S  +  L ++++EL  NLP TC + FP+  + L  F +++ PDE YY GG F F  +V   Y    PKVKC T+++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EAA
Sbjct:   28 RRVSVRDRLLVKEVAELEANLPCTCKVNFPD-PNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 162          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.309e-21
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 3
Query:  102 VKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 485
            +++ S  +  L ++++EL  NLP TC + FP+  + L  F +++ PDE YY GG F F  +V   Y    PKVKC T+++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EAA
Sbjct:   27 MRRISVRDRLLVKEVAELEANLPCTCKVNFPD-PNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 162          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.502e-20
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+ +++ +L      S +     +D+ +++ +I  P E  Y GG F+ T    P YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ ++  +  L T PN +DPL  E A + + +   +ES  R
Sbjct:    5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.185e-20
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+ +++ +L      + +     +D+ +++ +I  P E  Y GG F+ +    P YP + PKV  KTKVYHPNI+  G++CL+IL+E W P L I+ ++  +  L T PN +DPL  E A + + +   +ES  R
Sbjct:    5 RILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTAR 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 3
Query:  129 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+++++ +L    P +CS   P G DD+  ++ +I  P +  + GG F+ T    P YP + PKV  +TKVYHPNI+  G++CL+IL+E W P L ++ ++  +  L T PN +DPL  E A + + +   +ES  +
Sbjct:    5 RINKELRDLQRDPPVSCSAG-PTG-DDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQ 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.601e-19
Identity = 50/137 (36.50%), Postives = 81/137 (59.12%), Query Frame = 3
Query:  129 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+ +++ EL    P +CS   P G +D+ +++ +I  P+E  Y GG F+      P YP + PKV  +TKV+HPNI+  GN+CL+IL++ W P L I+ ++  +  L T PN +DPL  E A + + +   +E+  R
Sbjct:    5 RILKELKELQRDPPVSCSAG-PTG-EDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMAR 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.091e-19
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+ +++ +L      S +     +D+ +++ +I  P +  Y GG F+ T    P YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ ++  +  L T PN +DPL  E A + + +   +ES  R
Sbjct:    5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 139          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 49/137 (35.77%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  129 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+++++S+L    P +CS   P G DDL +++ SI  P +  Y GG F  +      YP + PK+   TK+YHPNI+  GN+CL+IL++ W P L I+ ++  +  L T  N +DPL  E A + + + K +E+  +
Sbjct:    5 RINKELSDLGRDPPSSCSAG-PVG-DDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAK 139          
The following BLAST results are available for this feature:
BLAST of CX069794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBE2F_BOVIN2.639e-2239.58NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
UB2FB_MOUSE7.677e-2245.38NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBE2F_XENTR1.309e-2140.44NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA1.309e-2140.15NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBC10_ARATH5.502e-2034.81Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC11_ARATH7.185e-2034.81Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH1.226e-1935.77Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH1.601e-1936.50Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC9_ARATH2.091e-1934.07SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_CANAL3.566e-1935.77Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G10-N20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069794 ID=CX069794; Name=CX069794; organism=Citrus sinensis; type=EST; length=794bp
ATCCCCTGCAGCTTAACTCTTAAGCAGGAAAAATGATTAAGCTGTTCAAA
GTCAAGGAGAAGCAAAGGGAAAATGCCGAAAATGCCAATGGGAAGACACC
TGTCAAGAAGCAAAGTGCTGGAGAATTGCGTCTTCATAGAGACATCAGTG
AACTGAACCTACCCAAAACTTGCAGCATAACATTTCCCAATGGCAAGGAT
GACTTGATGAACTTCGAGGTTTCCATTAGGCCTGACGAAGGATATTATGT
AGGTGGTACATTTGTGTTTACTTTCCAAGTATCTCCCATCTACCCTCATG
AGGCACCAAAGGTCAAATGCAAGACAAAGGTTTACCACCCCAATATCGAC
CTGGAGGGAAACGTCTGCCTCAACATTTTAAGAGAAGACTGGAAACCGGT
TCTGAATATAAACACCATCATTTATGGACTCTTCCATCTTTTCACGCAAC
CCAATTATGAGGATCCCCTCAATCATGAAGCAGCAGCTGTTTTAAGGGAT
AACCCAAAACTGTTTGAATCCAATGTTAGAAGAGCAATGGCTGGTGGATA
TGTGGGGCAAACCTTCTTCATTCGGTGCATATAATTGCTTTTGCCTGGAA
ATGCATGTTGCTTTGAAGGTAAGGAGCTGTAAATTTGGTCGCAGGGCTGC
TTCAATTTCTAGTAATGTGTTGGGACAAAAAATTCTAAGAATCATGCAAA
GGGAGTCAGAATGTTTGTATGCTGCTGTAACTTTGTTGTGTGTTTGTGAT
ATTGGCTGAGAACAAAATTATTTCCCTTAAAAAAAAAAAAAAAA
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