CX069794

Overview
NameCX069794
Unique NameCX069794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:70..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.957e-17
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 3 
Query:  129 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+ +++S+L    P  CS   P G DDL +++ +I  P +  Y GG F  T      YP + PK+   TK+YHPNI+  G++CL+ILR  W P L ++ ++  +  L   PN +DPL  + A + + + + +  + R
Sbjct:    5 RIQKELSDLQRDPPAHCSAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 139
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.957e-17
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = 3 
Query:  129 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+H+++++L  + P  CS   P G +D+ +++ +I  P++  Y GG F  T      YP + PKV+  T++YHPN++  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + +   +    R
Sbjct:    5 RIHKELNDLAQDPPAQCSAG-PVG-EDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAR 139
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.957e-17
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = 3 
Query:  129 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+H+++++L  + P  CS   P G +D+ +++ +I  P++  Y GG F  T      YP + PKV+  T++YHPN++  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + +   +    R
Sbjct:    5 RIHKELNDLAQDPPAQCSAG-PVG-EDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAR 139
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:  129 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+ +++ +L    P  CS   P G DDL +++ +I  P E  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RIQKELQDLGRDPPAQCSAG-PVG-DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAR 139
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 3 
Query:  129 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 497
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 3 
Query:  129 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 497
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 3 
Query:  129 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 497
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 3 
Query:  129 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 497
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = 3 
Query:  129 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 497
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
[Close]
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = 3 
Query:  129 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            R+++++ +L    P  CS   P G DDL +++ +I  P +  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RINKELQDLGRDPPAQCSAG-PVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAR 139
The following BLAST results are available for this feature:
BLAST of CX069794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2D1_BOVIN1.957e-1733.58Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
U2D2B_RAT1.957e-1732.85Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.957e-1732.85Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC2_CAEEL4.359e-1735.04Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D3_RAT4.359e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB4.359e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE4.359e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA4.359e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN4.359e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UBCD1_DROME7.436e-1734.31Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G10-N20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069794 ID=CX069794; Name=CX069794; organism=Citrus sinensis; type=EST; length=794bp
ATCCCCTGCAGCTTAACTCTTAAGCAGGAAAAATGATTAAGCTGTTCAAA
GTCAAGGAGAAGCAAAGGGAAAATGCCGAAAATGCCAATGGGAAGACACC
TGTCAAGAAGCAAAGTGCTGGAGAATTGCGTCTTCATAGAGACATCAGTG
AACTGAACCTACCCAAAACTTGCAGCATAACATTTCCCAATGGCAAGGAT
GACTTGATGAACTTCGAGGTTTCCATTAGGCCTGACGAAGGATATTATGT
AGGTGGTACATTTGTGTTTACTTTCCAAGTATCTCCCATCTACCCTCATG
AGGCACCAAAGGTCAAATGCAAGACAAAGGTTTACCACCCCAATATCGAC
CTGGAGGGAAACGTCTGCCTCAACATTTTAAGAGAAGACTGGAAACCGGT
TCTGAATATAAACACCATCATTTATGGACTCTTCCATCTTTTCACGCAAC
CCAATTATGAGGATCCCCTCAATCATGAAGCAGCAGCTGTTTTAAGGGAT
AACCCAAAACTGTTTGAATCCAATGTTAGAAGAGCAATGGCTGGTGGATA
TGTGGGGCAAACCTTCTTCATTCGGTGCATATAATTGCTTTTGCCTGGAA
ATGCATGTTGCTTTGAAGGTAAGGAGCTGTAAATTTGGTCGCAGGGCTGC
TTCAATTTCTAGTAATGTGTTGGGACAAAAAATTCTAAGAATCATGCAAA
GGGAGTCAGAATGTTTGTATGCTGCTGTAACTTTGTTGTGTGTTTGTGAT
ATTGGCTGAGAACAAAATTATTTCCCTTAAAAAAAAAAAAAAAA
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