CX069794

Overview
NameCX069794
Unique NameCX069794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:70..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   96 TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 539
            TP +K      RL RD   L       I+     +++M +   I  PD+  + GGTF  + Q S  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  I+  +  L   PN   P N EAA +  ++ + +   VR  +
Sbjct:    3 TPARK------RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVV 145          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 47/147 (31.97%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   54 KEKQRENAENANGKTPVKKQSAGEL-----RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPL 470
            +E +RE  +    +  +  ++A +L     R+ ++++E+ L  P  CS   P G D++  +  +I  P    Y GG F      SP YP + PKV  +T++YH NI+ +G +CL+IL+++W P L I+ ++  +  L T  N  DPL
Sbjct:   29 QEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 173          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  231 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            P +  + GGTF     +   YP  APKV+  TK+YHPN+D  G +CL+IL++ W P L I T++  +  L + PN +DPL ++ A   + N
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSN 132          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   96 TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 530
            TP +K      RL RD   L       I+     +++M +   I  PD+  + GGTF  + Q S  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  I+  +  L   PN   P N EAA +  ++ + +   VR
Sbjct:    3 TPARK------RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  231 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            P +  + GGTF     +   YP  APKV+  TK+YHPN+D  G +CL+IL++ W P L I T++  +  L + PN +DPL ++ A   + N
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  231 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            P +  + GGTF     +   YP  APKV+  TK+YHPN+D  G +CL+IL++ W P L I T++  +  L + PN +DPL ++ A   + N
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  231 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            P +  + GGTF     +   YP  APKV+  TK+YHPN+D  G +CL+IL++ W P L I T++  +  L + PN +DPL ++ A   + N
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  231 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            P +  + GGTF     +   YP  APKV+  TK+YHPN+D  G +CL+IL++ W P L I T++  +  L + PN +DPL ++ A   + N
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            R+ ++   L       I+    ++++  F V I  P +  Y GG F     +   YP  APKV+  TK+YHPNID  G +CL+IL++ W P L I T++  +  L + PN +DPL+   A   + N
Sbjct:    9 RIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSN 134          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 47/147 (31.97%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   54 KEKQRENAENANGKTPVKKQSAGEL-----RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPL 470
            +E  RE  +    +  +  ++A +L     R+ ++++E+ L  P  CS   P G D++  +  +I  P    Y GG F      SP YP + PKV  +T++YH NI+ +G +CL+IL+++W P L I+ ++  +  L T  N  DPL
Sbjct:   29 QEPDREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 173          
The following BLAST results are available for this feature:
BLAST of CX069794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC2_ARATH1.831e-1530.20Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UB2E2_HUMAN2.392e-1531.97Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBE2N_RAT3.124e-1539.56Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC1_ARATH3.124e-1530.82Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBE2N_PONAB4.080e-1539.56Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE4.080e-1539.56Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN4.080e-1539.56Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN4.080e-1539.56Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC36_ARATH4.080e-1534.13Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UB2E2_MOUSE4.080e-1531.97Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G10-N20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069794 ID=CX069794; Name=CX069794; organism=Citrus sinensis; type=EST; length=794bp
ATCCCCTGCAGCTTAACTCTTAAGCAGGAAAAATGATTAAGCTGTTCAAA
GTCAAGGAGAAGCAAAGGGAAAATGCCGAAAATGCCAATGGGAAGACACC
TGTCAAGAAGCAAAGTGCTGGAGAATTGCGTCTTCATAGAGACATCAGTG
AACTGAACCTACCCAAAACTTGCAGCATAACATTTCCCAATGGCAAGGAT
GACTTGATGAACTTCGAGGTTTCCATTAGGCCTGACGAAGGATATTATGT
AGGTGGTACATTTGTGTTTACTTTCCAAGTATCTCCCATCTACCCTCATG
AGGCACCAAAGGTCAAATGCAAGACAAAGGTTTACCACCCCAATATCGAC
CTGGAGGGAAACGTCTGCCTCAACATTTTAAGAGAAGACTGGAAACCGGT
TCTGAATATAAACACCATCATTTATGGACTCTTCCATCTTTTCACGCAAC
CCAATTATGAGGATCCCCTCAATCATGAAGCAGCAGCTGTTTTAAGGGAT
AACCCAAAACTGTTTGAATCCAATGTTAGAAGAGCAATGGCTGGTGGATA
TGTGGGGCAAACCTTCTTCATTCGGTGCATATAATTGCTTTTGCCTGGAA
ATGCATGTTGCTTTGAAGGTAAGGAGCTGTAAATTTGGTCGCAGGGCTGC
TTCAATTTCTAGTAATGTGTTGGGACAAAAAATTCTAAGAATCATGCAAA
GGGAGTCAGAATGTTTGTATGCTGCTGTAACTTTGTTGTGTGTTTGTGAT
ATTGGCTGAGAACAAAATTATTTCCCTTAAAAAAAAAAAAAAAA
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