CX069794

Overview
NameCX069794
Unique NameCX069794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:70..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 40/136 (29.41%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 533
            RL RD  +L       ++    +D+++ +E  I  P E  +  GTF  + + +  YP++ P VK  +K++HPN+  +G++CL+IL+  W P  ++  I+  +  L  +PN   P N  AA + ++N + +E  V++
Sbjct:    8 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQ 143          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = 3
Query:  114 SAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 533
            SA E  L + + E+  N P+  S+   + K  +  +EV I  P++  Y GG F  T      YP   PK+K  T+++HPN+   G VC++IL              E W PV +  TI+  +  + + PN E P N +AA   R+NP+ F+  VRR
Sbjct:    4 SASEQLLRKQLKEIQKNPPQGFSVGLVDDKS-IFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRR 158          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  231 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 503
            P++  + GG F     +   YP  APKV+  TK+YHPNID  G +CL++L++ W P L I TI+  +  L + PN +DPL ++ A + + N
Sbjct:   42 PNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVN 132          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 527
            RL RD   L       ++    ++++M +   I   EG  +  GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:    8 RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 527
            RL RD   L       ++    ++++M +   I   EG  +  GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:    8 RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 527
            RL RD   L       ++    ++++M +   I   EG  +  GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:    8 RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 527
            RL RD   L       ++    ++++M +   I   EG  +  GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:    8 RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 527
            RL RD   L       ++    ++++M +   I   EG  +  GTF    + S  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:    8 RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 39/134 (29.10%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 527
            RL RD   L       ++    ++++M +   I   EG  +  GTF  T + +  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:    8 RLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 39/134 (29.10%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  129 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 527
            RL RD   L       ++    ++++M +   I   EG  +  GTF  T + +  YP++ P V+  +K++HPN+  +G++CL+IL+  W P  ++++I+  +  L  +PN   P N +AA + ++N + +E  V
Sbjct:    8 RLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
The following BLAST results are available for this feature:
BLAST of CX069794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC1_CAEEL6.960e-1529.41Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC15_SCHPO6.960e-1533.33Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBE2N_DROME9.090e-1539.56Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBE2B_RAT9.090e-1529.10Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT9.090e-1529.10Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE9.090e-1529.10Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN9.090e-1529.10Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN9.090e-1529.10Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBE2A_MOUSE9.090e-1529.10Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN9.090e-1529.10Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G10-N20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069794 ID=CX069794; Name=CX069794; organism=Citrus sinensis; type=EST; length=794bp
ATCCCCTGCAGCTTAACTCTTAAGCAGGAAAAATGATTAAGCTGTTCAAA
GTCAAGGAGAAGCAAAGGGAAAATGCCGAAAATGCCAATGGGAAGACACC
TGTCAAGAAGCAAAGTGCTGGAGAATTGCGTCTTCATAGAGACATCAGTG
AACTGAACCTACCCAAAACTTGCAGCATAACATTTCCCAATGGCAAGGAT
GACTTGATGAACTTCGAGGTTTCCATTAGGCCTGACGAAGGATATTATGT
AGGTGGTACATTTGTGTTTACTTTCCAAGTATCTCCCATCTACCCTCATG
AGGCACCAAAGGTCAAATGCAAGACAAAGGTTTACCACCCCAATATCGAC
CTGGAGGGAAACGTCTGCCTCAACATTTTAAGAGAAGACTGGAAACCGGT
TCTGAATATAAACACCATCATTTATGGACTCTTCCATCTTTTCACGCAAC
CCAATTATGAGGATCCCCTCAATCATGAAGCAGCAGCTGTTTTAAGGGAT
AACCCAAAACTGTTTGAATCCAATGTTAGAAGAGCAATGGCTGGTGGATA
TGTGGGGCAAACCTTCTTCATTCGGTGCATATAATTGCTTTTGCCTGGAA
ATGCATGTTGCTTTGAAGGTAAGGAGCTGTAAATTTGGTCGCAGGGCTGC
TTCAATTTCTAGTAATGTGTTGGGACAAAAAATTCTAAGAATCATGCAAA
GGGAGTCAGAATGTTTGTATGCTGCTGTAACTTTGTTGTGTGTTTGTGAT
ATTGGCTGAGAACAAAATTATTTCCCTTAAAAAAAAAAAAAAAA
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