EY701058

Overview
NameEY701058
Unique NameEY701058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.168e-43
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+ +RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          

HSP 2 Score: 34.6538 bits (78), Expect = 4.168e-43
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 4.168e-43
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+ +RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          

HSP 2 Score: 34.6538 bits (78), Expect = 4.168e-43
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 4.168e-43
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI FA+T+IKG+GRR A++V +KAD+D+ +RAGEL+  E++ ++ ++ NPRQ+KIPDWFLN  KD KDGKYSQV++N LD KL +D+ERL  IR HRGLRH+WGL              +TVGVSKK+
Sbjct:   21 DGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          

HSP 2 Score: 34.6538 bits (78), Expect = 4.168e-43
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILRVLNTN+
Sbjct:    1 MSLVIPEKFQHILRVLNTNI 20          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.202e-42
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DGK+K+MFA+T+IKG+GRR +NIV KKAD+D+++RAGE +  E++ ++ +++NPRQ+KIPDWFLN  KD  DGKYSQ+ S+ LD KL +D+ERL  IR HRG+RHYWGL              +TVGVSKK+
Sbjct:   21 DGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          

HSP 2 Score: 32.3426 bits (72), Expect = 1.202e-42
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  + FQHILR++NTN+
Sbjct:    1 MSLVIPDKFQHILRIMNTNI 20          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.410e-40
Identity = 72/132 (54.55%), Postives = 96/132 (72.73%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DGK+K+  A+T+IKG+GRR +NIV KKADVD+ +RAGE +  E+D ++ +++NP Q+K+P+WFLN  KD  DGKY Q+ S+ LD KL DD+ERL  IR+HRGLRHYWGL              +TVGVSKK+
Sbjct:   21 DGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          

HSP 2 Score: 33.4982 bits (75), Expect = 1.410e-40
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  E FQHILR++NTN+
Sbjct:    1 MSLVIPEKFQHILRIMNTNI 20          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.296e-40
Identity = 73/132 (55.30%), Postives = 93/132 (70.45%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DGK K+MFA+T IKG+GRR ANIVCKKAD+DM++RAGEL+  EL+ ++ ++ NP QFKIP WFLN  KD  DGK  Q+++N +D KL +D+ERL  I+ HRGLRH   L              KTVGVSKK+
Sbjct:   21 DGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGVSKKK 152          

HSP 2 Score: 33.8834 bits (76), Expect = 5.296e-40
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:   57 MSLVANEDFQHILRVLNTNV 116
            MSLV  ++FQHILR+LNTNV
Sbjct:    1 MSLVVPDNFQHILRLLNTNV 20          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.945e-37
Identity = 67/132 (50.76%), Postives = 94/132 (71.21%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++KI +ALT +KG+GRR AN+VCKKAD+D ++RAGELS  E++ L  ++ +PRQ+ IP WFLN  KD KDGKYS  ++N +D+K  +D+ERL  IR HRG+RH++GL              +TVGV+ +R
Sbjct:   23 DGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFGLRVRGQKTKTTGRRGRTVGVAGRR 154          

HSP 2 Score: 29.6462 bits (65), Expect = 3.945e-37
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 3
Query:   60 SLVANEDFQHILRVLNTNV-GREAEDY 137
            SLV   +FQHI+R+ NTNV GR    Y
Sbjct:    4 SLVFQGEFQHIIRIYNTNVDGRRKIQY 30          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 135.576 bits (340), Expect = 8.458e-34
Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGL 444
            DG  KI++ALT+IKG+GRR +N+VCKKADVD+++RAGEL+  EL+ ++ ++ NP  +KIP WFLN   D  DGK    ++N ++ KL DD+ERL  IR HRG+RH+WGL
Sbjct:   23 DGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGL 131          

HSP 2 Score: 30.4166 bits (67), Expect = 8.458e-34
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 3
Query:   57 MSLVANED--FQHILRVLNTNV 116
            MSLV  E   FQHILR+LNTNV
Sbjct:    1 MSLVVQEQGSFQHILRLLNTNV 22          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.010e-32
Identity = 61/132 (46.21%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG++K+ +ALT IKG GRR A +VCK+A +D+N+RAG ++ AE++ ++ ++     +KIP WFLN  KD KDGK SQ+++NA++ +L +D+E L  +R HRGLRHYWGL              +TVGVS+ +
Sbjct:   22 DGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQNTKTTGRRGRTVGVSRTK 153          

HSP 2 Score: 26.5646 bits (57), Expect = 2.010e-32
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 3
Query:   60 SLVANEDFQHILRVLNTNV-GREAEDY 137
            ++ +  +FQH+LRV NTN+ GR    Y
Sbjct:    3 TVTSESEFQHMLRVCNTNLDGRRKVPY 29          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.212e-19
Identity = 47/132 (35.61%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG   I  ALT I+GIG+  A  +CK  D+D + + G +    +  +  V+ NP++F IP+WFLN   DY+ G+   ++ + L+M L DD+ R+  IR+++G RH  GL               +VGVS+ R
Sbjct:   18 DGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQRTKSTFRHGSSVGVSRTR 149          
The following BLAST results are available for this feature:
BLAST of EY701058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS18_CAPHI4.168e-4356.0640S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]
RS18_CANFA4.168e-4356.0640S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN4.168e-4356.0640S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_SPOFR1.202e-4256.0640S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DROME1.410e-4054.5540S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_SCHPO5.296e-4055.3040S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_DICDI3.945e-3750.7640S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_YEAST8.458e-3455.0540S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI2.010e-3246.2140S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS13_METST3.212e-1935.6130S ribosomal protein S13P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-102-E05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY701058 ID=EY701058; Name=EY701058; organism=Citrus sinensis; type=EST; length=878bp
CACGCGTCCGGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAA
TCGATAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGT
GCTGAACACTAACGTCGGACGGGAAGCAGAAGATTATGTTTGCGCTTACT
TCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAAAAAGC
TGATGTTGACATGAACGAGAGGGCCGGTGAACTATCTGCTGCTGAACTTG
ACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGAT
TGGTTCTTGAACATACATAAGGATTACAAAGATGGAAAGTATTCTCAGGT
TGTATCCAATGCACTGGACATGAAGTTGACAGATGATGTGGAGCGTCTGA
ACAATATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTC
CGTGGACGACACACCAATACCACCGGTCGTCGTGGAAAGACTGTTGGTGT
CTCCAAGAAGCGTTGAGCTGTCCGTTATCACTGTGATGAACAATCTATAC
ACATGTGCAAGAAGGAGTTGGGACTTGCTATTGCTGAACCTGTGCATCAG
ACAATATTAGATCTATCTGCTTTTCTTGGGATGGGGTTCAAAGCATTCGG
ACCTGTCCGTCCTTTAGCGATGGATTCTCTCGAGCGGTAATATTTCGATT
CCCACGGTCTTGCACCCTATATTTCAGCGCCCCTCTTGTATCTCCTTCCA
GTTTCGAGCTCAACCAAACTACAGCCGGCGCCCGCCGCAGCGCCCAACGG
GGCGGTCCGCCTAGAAGGATCCGACCCTTACTCTCCCCTGCATGTCAACG
TGGTGGGCCTCTTTGTGGGGGGCCCTGA
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