EY701058

Overview
NameEY701058
Unique NameEY701058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.594e-18
Identity = 48/132 (36.36%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++  +  ++ +P    IP W +N  KDY+ GK   +++  LDM + +D+ RL  IR +RG+RH  GL              +TVGVSKK+
Sbjct:   16 DGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSKKK 147          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.082e-18
Identity = 48/132 (36.36%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG +++ +ALT+IKGIG   A +VC+ A +D   +AG L+  ++  +  ++A+P    IP W +N  KDY+ G+   +++  LDM + +D+ RL  IR +RG+RH  GL              +TVGVS+K+
Sbjct:   16 DGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.551e-18
Identity = 44/132 (33.33%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG + +  ALTSIKG+G+ L+  +   A  D+N+R G LS  E++ L   + NP ++ IP W +N   DY+ G+   ++ + L+M L +D+ R+   R+++G RH  GL               +VGV +K+
Sbjct:   17 DGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQRTKSTFRKGSSVGVRRKK 148          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.551e-18
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVA--NPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG +K+ +ALT IKGIG R+A  +C++  +D  ++ GELS  E++ +   +   +  +  IP W  N  KDY+ G+   +V   L+M +  D++RL  IR +RG+RH  GL              +TVGV KK+
Sbjct:   18 DGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYRGIRHELGLPVRGQRTKSSFRRGRTVGVKKKQ 151          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.033e-17
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++  +  ++ +P    IP W +N  KDY+ G+   +++  LDM + +D+ RL  IR +RG+RH  GL              +TVGVS+K+
Sbjct:   16 DGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG +K++ AL  I G+G  +A  + + A +D N+ AG L+  E+  +  V+A+P +F IP W  N  KDY  G+   V+ + L +   +D+ RL  IR +RG+RH  GL               TVGVS+++
Sbjct:   18 DGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQRTKSTFRRGPTVGVSRRK 149          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 42/130 (32.31%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSK 507
            DG + I  ALT IKG+G  L+  +C+  D+D   + G ++  ++  +  ++ NP++F IP+W LN  +DY+ G+   ++ + LDM L DD+ R+   R+++G RH  GL               +VGV +
Sbjct:   17 DGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRHEAGLPVRGQRTKSTFRNSSSVGVKR 146          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG  K ++ L  IKG+G  LA  +C++  +D   R G L+  E+  +  +++NP  + IP W LN  KDY  GK   ++   L   +  D+ER   I++ RG+RH  GL               TVGV KKR
Sbjct:   19 DGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALGLKVRGQRTRTTGRLGLTVGVRKKR 150          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.341e-16
Identity = 47/132 (35.61%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG +++ +ALT IKGIG   A +V + A +D   +AG L+  ++  +  ++A+P    IP W +N  KDY+ GK   +++  L M   +DV RL  IR +RG+RH  GL               TVGVS+++
Sbjct:   17 DGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQRTRSNFRHGTTVGVSRRK 148          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.009e-15
Identity = 41/132 (31.06%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            +G++ +  AL  +KGIG RL+  + KK D+D ++R GEL   +++ L   +       IP W  N  +D   GK   +VSN LD+++ DD+  +  +R+++G+RH  GL                +GV +K+
Sbjct:   23 NGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRHERGLKVRGQRMRSNGRKGLAIGVVRKK 154          

HSP 2 Score: 22.7126 bits (47), Expect = 1.009e-15
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   72 NEDFQHILRVLNTNVGRE 125
            NE+FQ+I+R+ N ++  E
Sbjct:    8 NENFQYIVRIANKDLNGE 25          
The following BLAST results are available for this feature:
BLAST of EY701058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS13_PYRHO1.594e-1836.3630S ribosomal protein S13P OS=Pyrococcus horikoshi... [more]
RS13_PYRFU2.082e-1836.3630S ribosomal protein S13P OS=Pyrococcus furiosus ... [more]
RS13_METTH3.551e-1833.3330S ribosomal protein S13P OS=Methanobacterium the... [more]
RS13_METKA3.551e-1835.8230S ribosomal protein S13P OS=Methanopyrus kandler... [more]
RS13_PYRAB1.033e-1734.8530S ribosomal protein S13P OS=Pyrococcus abyssi GN... [more]
RS13_METJA3.926e-1734.8530S ribosomal protein S13P OS=Methanocaldococcus j... [more]
RS13_METS31.142e-1632.3130S ribosomal protein S13P OS=Methanobrevibacter s... [more]
RS13_STAMF1.492e-1634.8530S ribosomal protein S13P OS=Staphylothermus mari... [more]
RS13_PYRKO4.341e-1635.6130S ribosomal protein S13P OS=Pyrococcus kodakarae... [more]
RS13_PICTO1.009e-1531.0630S ribosomal protein S13P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-102-E05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY701058 ID=EY701058; Name=EY701058; organism=Citrus sinensis; type=EST; length=878bp
CACGCGTCCGGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAA
TCGATAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGT
GCTGAACACTAACGTCGGACGGGAAGCAGAAGATTATGTTTGCGCTTACT
TCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAAAAAGC
TGATGTTGACATGAACGAGAGGGCCGGTGAACTATCTGCTGCTGAACTTG
ACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGAT
TGGTTCTTGAACATACATAAGGATTACAAAGATGGAAAGTATTCTCAGGT
TGTATCCAATGCACTGGACATGAAGTTGACAGATGATGTGGAGCGTCTGA
ACAATATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTC
CGTGGACGACACACCAATACCACCGGTCGTCGTGGAAAGACTGTTGGTGT
CTCCAAGAAGCGTTGAGCTGTCCGTTATCACTGTGATGAACAATCTATAC
ACATGTGCAAGAAGGAGTTGGGACTTGCTATTGCTGAACCTGTGCATCAG
ACAATATTAGATCTATCTGCTTTTCTTGGGATGGGGTTCAAAGCATTCGG
ACCTGTCCGTCCTTTAGCGATGGATTCTCTCGAGCGGTAATATTTCGATT
CCCACGGTCTTGCACCCTATATTTCAGCGCCCCTCTTGTATCTCCTTCCA
GTTTCGAGCTCAACCAAACTACAGCCGGCGCCCGCCGCAGCGCCCAACGG
GGCGGTCCGCCTAGAAGGATCCGACCCTTACTCTCCCCTGCATGTCAACG
TGGTGGGCCTCTTTGTGGGGGGCCCTGA
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