EY701058

Overview
NameEY701058
Unique NameEY701058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  121 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSK 507
            G  K+ + L  +KGIG  LA  +C+   +D N+R G L+ AE++ +   +ANP    IP W LN  KDY+ GK   +V   L   +  D+ER   IR+ RG+RH  GL               T+GV K
Sbjct:   20 GDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHALGLKVRGQRTATTGRIGMTIGVRK 148          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG  K+ +AL  +KGIG   A  + +K  +D N R GELS AE+  +  V+++     +P W  N  KDY+ G    +V++ L   + +D+ER    R+ RG+RH  GL               T+GV++K+
Sbjct:   17 DGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQRTRTTGRTGMTIGVARKK 148          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.063e-14
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG ++I FALT I+GIG R+A  +CK+  +D+ +RAGE+   E+  +   + +P    IP+ ++N  +D  DG  S ++   LD  L   +ER    +  R  R   GL              +++GVS+K+
Sbjct:   22 DGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQRTKSNGRRGRSMGVSRKK 153          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.306e-14
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG Q + FALT IKGIG R++ I+ ++A VD +   G L   ++D L  V+ N  +  +P W LN  +D   G+   +    L M + +D+  +  IR+++G+RH  G                TVGV +K+
Sbjct:   81 DGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQRTKSTGRTGATVGVVRKK 211          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DGK+++  ALT IKG+GRRLA +   KA VD     G+L   +++ L  V+ + R   IP W +N  KD   G    V+   +   L +D++ +   R+++G+RH  GL               TVGV++K+
Sbjct:   24 DGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELGLRVRGQRTRSTGRSGATVGVTRKK 154          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.895e-13
Identity = 37/132 (28.03%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            +G++ I  AL+ +KGIG RL   + ++ ++   ++ GEL   E++ L   V N +++ +PDW LN  ++   GK   +V+  LD+++ +D+  +  IR+++G+RH  G                ++GV +K+
Sbjct:   40 NGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQRTRSNGRRGLSIGVVRKK 170          

HSP 2 Score: 23.0978 bits (48), Expect = 1.895e-13
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   72 NEDFQHILRVLNTNVGRE 125
            N+DFQ+I+R+ N ++  E
Sbjct:   25 NKDFQYIVRIANKDLNGE 42          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.895e-13
Identity = 35/132 (26.52%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            +G++ +  AL+ +KGIG RL  ++ ++ D+ ++++ GEL   +L+ L   V   +++ +P+W LN  ++   GK   +VS  L++++ +D+  +  IR+++G+RH  G                ++GV +K+
Sbjct:   40 NGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKKVRGQRTRSNGRKGLSIGVVRKK 170          

HSP 2 Score: 23.0978 bits (48), Expect = 1.895e-13
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   72 NEDFQHILRVLNTNVGRE 125
            N+DFQ+I+R+ N ++  E
Sbjct:   25 NKDFQYIVRIANKDLNGE 42          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 40/132 (30.30%), Postives = 67/132 (50.76%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG  K+ +AL  +KGIG   A  +  K  +D + R GELS  ++  +   + + +  ++P+W  N  KDY+ G    +V++ L   + +D+ER   I++ RG+RH  GL               TVGV + +
Sbjct:   19 DGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQRTRTTGRTGVTVGVRRSK 150          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVS 504
            DG + +  ALT + GIGRR+A I+ +KA+VD  +  G L   ++D+++  V      ++P+W  N  KD+  G+ +  + N L M    D+ R+  I  +RG+RH  G                T+GV+
Sbjct:   27 DGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQRTKSTGRTEGTIGVN 154          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 5.418e-13
Identity = 40/131 (30.53%), Postives = 62/131 (47.33%), Query Frame = 1
Query:  121 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            G + + +ALT + G+GRR A ++ K A VD +   G L   E+  L   +       +P W LN  KD   G+   ++   + +   +D+  L  +R +RGLRH  GL               TVGVS+K+
Sbjct:   33 GAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQRTKSTGRRGSTVGVSRKK 162          

HSP 2 Score: 23.0978 bits (48), Expect = 5.418e-13
Identity = 6/15 (40.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:   72 NEDFQHILRVLNTNV 116
            NE+ +H++R++NT++
Sbjct:   17 NEELRHLVRIMNTDL 31          
The following BLAST results are available for this feature:
BLAST of EY701058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS13_HYPBU1.263e-1536.4330S ribosomal protein S13P OS=Hyperthermus butylic... [more]
RS13_SULSO8.186e-1533.3330S ribosomal protein S13P OS=Sulfolobus solfatari... [more]
RS18_ENCCU4.063e-1431.8240S ribosomal protein S18 OS=Encephalitozoon cunic... [more]
RS13_UNCMA5.306e-1432.5830S ribosomal protein S13P OS=Uncultured methanoge... [more]
RS13_METTP1.182e-1333.3330S ribosomal protein S13P OS=Methanosaeta thermop... [more]
RS13_THEVO1.895e-1328.0330S ribosomal protein S13P OS=Thermoplasma volcani... [more]
RS13_THEAC1.895e-1326.5230S ribosomal protein S13P OS=Thermoplasma acidoph... [more]
RS13_SULTO3.439e-1330.3030S ribosomal protein S13P OS=Sulfolobus tokodaii ... [more]
RS13_NATPD4.492e-1331.0130S ribosomal protein S13P OS=Natronomonas pharaon... [more]
RS13_METAC5.418e-1330.5330S ribosomal protein S13P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-102-E05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY701058 ID=EY701058; Name=EY701058; organism=Citrus sinensis; type=EST; length=878bp
CACGCGTCCGGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAA
TCGATAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGT
GCTGAACACTAACGTCGGACGGGAAGCAGAAGATTATGTTTGCGCTTACT
TCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAAAAAGC
TGATGTTGACATGAACGAGAGGGCCGGTGAACTATCTGCTGCTGAACTTG
ACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGAT
TGGTTCTTGAACATACATAAGGATTACAAAGATGGAAAGTATTCTCAGGT
TGTATCCAATGCACTGGACATGAAGTTGACAGATGATGTGGAGCGTCTGA
ACAATATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTC
CGTGGACGACACACCAATACCACCGGTCGTCGTGGAAAGACTGTTGGTGT
CTCCAAGAAGCGTTGAGCTGTCCGTTATCACTGTGATGAACAATCTATAC
ACATGTGCAAGAAGGAGTTGGGACTTGCTATTGCTGAACCTGTGCATCAG
ACAATATTAGATCTATCTGCTTTTCTTGGGATGGGGTTCAAAGCATTCGG
ACCTGTCCGTCCTTTAGCGATGGATTCTCTCGAGCGGTAATATTTCGATT
CCCACGGTCTTGCACCCTATATTTCAGCGCCCCTCTTGTATCTCCTTCCA
GTTTCGAGCTCAACCAAACTACAGCCGGCGCCCGCCGCAGCGCCCAACGG
GGCGGTCCGCCTAGAAGGATCCGACCCTTACTCTCCCCTGCATGTCAACG
TGGTGGGCCTCTTTGTGGGGGGCCCTGA
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