EY701058

Overview
NameEY701058
Unique NameEY701058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.867e-13
Identity = 41/132 (31.06%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG  K+ +AL  IKGIG   A I+ +K ++D ++R GE+S  ++  +  ++ N    + P+W  N  KDY+ G    +V++ L   + +D+ER    R+ RG+RH  GL               T+GV + +
Sbjct:   18 DGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLGLKVRGQRTRTTGRTGATIGVRRAK 149          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.867e-13
Identity = 44/132 (33.33%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG  K+ + L SIKGIG   A  V +   +D  ++ G L+  E+  L  V+ +  Q  +P W  N  KDY+ GK   ++ + L      D+ER   I + RG+RH +GL               T+GV KKR
Sbjct:   19 DGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 150          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 9.142e-13
Identity = 41/131 (31.30%), Postives = 62/131 (47.33%), Query Frame = 1
Query:  121 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            G + + +ALT + GIGRR A ++ K A VD     G L   E+  L   +    +  +P W LN  KD   G+   ++   + +   +D+  L  +R +RGLRH  GL               TVGVS+K+
Sbjct:   33 GAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQRTKSTGRRGSTVGVSRKK 162          

HSP 2 Score: 23.0978 bits (48), Expect = 9.142e-13
Identity = 6/15 (40.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:   72 NEDFQHILRVLNTNV 116
            NE+ +H++R++NT++
Sbjct:   17 NEELRHLVRIMNTDL 31          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.602e-12
Identity = 41/131 (31.30%), Postives = 62/131 (47.33%), Query Frame = 1
Query:  121 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            G + + +ALT + GIGRR A ++ K A VD     G L   E+  L   + N     +P W LN  KD   G+   ++   + +   +D+  L  +R +RGLRH  GL               TVGVS+++
Sbjct:   33 GAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQRTKSTGRRGSTVGVSRRK 162          

HSP 2 Score: 23.0978 bits (48), Expect = 2.602e-12
Identity = 6/15 (40.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:   72 NEDFQHILRVLNTNV 116
            NE+ +H++R++NT++
Sbjct:   17 NEEIRHLVRIMNTDL 31          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.912e-12
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG + ++ +LT IKG+GR  A  + + A V+ N   G+L  A +D +  VV+N    +IP W  N  KD   G    ++   + M + DD+  L  IR +RG+RH  G                 VGV +K+
Sbjct:   20 DGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQRTKSTGRTGLIVGVKRKK 150          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG + +MFALT IKGIG R A  +  +  VD   + GEL    ++ +   V    +  +P W LN  KD   G+   ++S  +D     D+ERL  ++ +RG+RH  G               +TVGV +++
Sbjct:   15 DGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQRTRSTGRKGRTVGVVRRK 145          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_NANEQ (30S ribosomal protein S13P OS=Nanoarchaeum equitans GN=rps13p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.887e-11
Identity = 41/132 (31.06%), Postives = 61/132 (46.21%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG + I   L  + G+    A+ VC    +D   + G LS  EL+ L   + NP ++ IP W  N  +D + GK   +V N   + +  D++R   I + RG RH  GL              +TVGV KK+
Sbjct:   22 DGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDALRNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPVRGQRTRSHHRKGRTVGVIKKK 153          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 39/132 (29.55%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG +++ ++LT I+GIG   A  +C+K  +D +   G LS  +++ L   V N  +   P WFLN  KD + GK   ++   L +    DV+ +  +++ +G+RH  GL                 GV+KK+
Sbjct:   17 DGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQRTVTTGRLGPVAGVTKKK 147          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 40/129 (31.01%), Postives = 62/129 (48.06%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVS 504
            DG + +  ALT + GIG R A I+ +KADVD     G+L    ++ ++  V N     +P+W  N  KDY  G+ +    N L +    D+ R+  I ++RG+RH  G                T+GV+
Sbjct:   32 DGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQRTKSTGRTEGTIGVN 159          
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_PYRCJ (30S ribosomal protein S13P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.171e-11
Identity = 38/132 (28.79%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG + + +AL  I+GIG   A  +C+K  +D +   G L   +++ L   V N  +   P WFLN  KD + G+   ++ + L +    DV+ +  +++ +G+RH  GL               T GV+KK+
Sbjct:   17 DGNKTVAYALAKIRGIGIATAYAICRKLGIDPHATLGLLPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQRTVTTGRFGATAGVTKKK 147          
The following BLAST results are available for this feature:
BLAST of EY701058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS13_SULAC5.867e-1331.0630S ribosomal protein S13P OS=Sulfolobus acidocald... [more]
RS13_AERPE5.867e-1333.3330S ribosomal protein S13P OS=Aeropyrum pernix GN=... [more]
RS13_METMA9.142e-1331.3030S ribosomal protein S13P OS=Methanosarcina mazei... [more]
RS13_METBF2.602e-1231.3030S ribosomal protein S13P OS=Methanosarcina barke... [more]
RS13_METHJ2.912e-1231.8230S ribosomal protein S13P OS=Methanospirillum hun... [more]
RS13_ARCFU6.486e-1231.8230S ribosomal protein S13P OS=Archaeoglobus fulgid... [more]
RS13_NANEQ1.887e-1131.0630S ribosomal protein S13P OS=Nanoarchaeum equitan... [more]
RS13_PYRIL2.465e-1129.5530S ribosomal protein S13P OS=Pyrobaculum islandic... [more]
RS13_HALMA4.204e-1131.0130S ribosomal protein S13P OS=Haloarcula marismort... [more]
RS13_PYRCJ7.171e-1128.7930S ribosomal protein S13P OS=Pyrobaculum calidifo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-102-E05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY701058 ID=EY701058; Name=EY701058; organism=Citrus sinensis; type=EST; length=878bp
CACGCGTCCGGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAA
TCGATAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGT
GCTGAACACTAACGTCGGACGGGAAGCAGAAGATTATGTTTGCGCTTACT
TCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAAAAAGC
TGATGTTGACATGAACGAGAGGGCCGGTGAACTATCTGCTGCTGAACTTG
ACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGAT
TGGTTCTTGAACATACATAAGGATTACAAAGATGGAAAGTATTCTCAGGT
TGTATCCAATGCACTGGACATGAAGTTGACAGATGATGTGGAGCGTCTGA
ACAATATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTC
CGTGGACGACACACCAATACCACCGGTCGTCGTGGAAAGACTGTTGGTGT
CTCCAAGAAGCGTTGAGCTGTCCGTTATCACTGTGATGAACAATCTATAC
ACATGTGCAAGAAGGAGTTGGGACTTGCTATTGCTGAACCTGTGCATCAG
ACAATATTAGATCTATCTGCTTTTCTTGGGATGGGGTTCAAAGCATTCGG
ACCTGTCCGTCCTTTAGCGATGGATTCTCTCGAGCGGTAATATTTCGATT
CCCACGGTCTTGCACCCTATATTTCAGCGCCCCTCTTGTATCTCCTTCCA
GTTTCGAGCTCAACCAAACTACAGCCGGCGCCCGCCGCAGCGCCCAACGG
GGCGGTCCGCCTAGAAGGATCCGACCCTTACTCTCCCCTGCATGTCAACG
TGGTGGGCCTCTTTGTGGGGGGCCCTGA
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