EY701058

Overview
NameEY701058
Unique NameEY701058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METMP (30S ribosomal protein S13P OS=Methanococcus maripaludis GN=rps13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 35/132 (26.52%), Postives = 65/132 (49.24%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            +GK  + +AL  +KGIGR +A  V +  ++D  ++AG L+  ++  +  V+ +P    IP W  N  KD   G    ++   L + + +D+  +  IR ++G+RH   L               ++GV +K+
Sbjct:   18 EGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQRTRGSFRKGTSMGVKRKK 149
[Close]
BLAST of EY701058 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 40/132 (30.30%), Postives = 62/132 (46.97%), Query Frame = 1 
Query:  118 DGKQKIMFALTSIKGIGRRLANIVCKKADVDMNERAGELSAAELDNLMVVVANPRQFKIPDWFLNIHKDYKDGKYSQVVSNALDMKLTDDVERLNNIRNHRGLRHYWGLXXXXXXXXXXXXXXKTVGVSKKR 513
            DG + +  ALT IKGIG   +  +   A VD +   G+L    +  +   V    + ++PDW +N  KD   G+   ++   L M   DDV R+  +R++RG+RH  G                TVGV +K+
Sbjct:   18 DGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETGQKVRGQRTKSTGRTGTTVGVKRKK 148
The following BLAST results are available for this feature:
BLAST of EY701058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS13_METMP9.366e-1126.5230S ribosomal protein S13P OS=Methanococcus maripa... [more]
RS13_METMJ9.366e-1130.3030S ribosomal protein S13P OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-102-E05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY701058 ID=EY701058; Name=EY701058; organism=Citrus sinensis; type=EST; length=878bp
CACGCGTCCGGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAA
TCGATAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGT
GCTGAACACTAACGTCGGACGGGAAGCAGAAGATTATGTTTGCGCTTACT
TCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAAAAAGC
TGATGTTGACATGAACGAGAGGGCCGGTGAACTATCTGCTGCTGAACTTG
ACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGAT
TGGTTCTTGAACATACATAAGGATTACAAAGATGGAAAGTATTCTCAGGT
TGTATCCAATGCACTGGACATGAAGTTGACAGATGATGTGGAGCGTCTGA
ACAATATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTC
CGTGGACGACACACCAATACCACCGGTCGTCGTGGAAAGACTGTTGGTGT
CTCCAAGAAGCGTTGAGCTGTCCGTTATCACTGTGATGAACAATCTATAC
ACATGTGCAAGAAGGAGTTGGGACTTGCTATTGCTGAACCTGTGCATCAG
ACAATATTAGATCTATCTGCTTTTCTTGGGATGGGGTTCAAAGCATTCGG
ACCTGTCCGTCCTTTAGCGATGGATTCTCTCGAGCGGTAATATTTCGATT
CCCACGGTCTTGCACCCTATATTTCAGCGCCCCTCTTGTATCTCCTTCCA
GTTTCGAGCTCAACCAAACTACAGCCGGCGCCCGCCGCAGCGCCCAACGG
GGCGGTCCGCCTAGAAGGATCCGACCCTTACTCTCCCCTGCATGTCAACG
TGGTGGGCCTCTTTGTGGGGGGCCCTGA
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