CX046403

Overview
NameCX046403
Unique NameCX046403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046403 vs. ExPASy Swiss-Prot
Match: 6PGD_TRYBB (6-phosphogluconate dehydrogenase, decarboxylating OS=Trypanosoma brucei brucei GN=GND PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.168e-38
Identity = 83/180 (46.11%), Postives = 115/180 (63.89%), Query Frame = 3
Query:   87 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---AKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 617
            +G+ GL VMG NLALNIAEKGF ++V+NRT SK +E ++    A   GNL    F   E+F  S++KPR  ++LV+AG+  D T + L    EKGD ++D GN  +++  RR + +   GL +LGMG+SGGEEGAR GP+  PGG+   ++ I  I+   AA+  D  PCVT  G GG+G
Sbjct:    5 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLK--AFETMEAFAASLKKPRKALILVQAGAATDSTTEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAG 182          
BLAST of CX046403 vs. ExPASy Swiss-Prot
Match: 6PGD_TREPA (6-phosphogluconate dehydrogenase, decarboxylating OS=Treponema pallidum GN=gnd PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.698e-38
Identity = 82/177 (46.33%), Postives = 111/177 (62.71%), Query Frame = 3
Query:   87 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 617
            IG  GLAVMG+NL LNI   GF ++V+NRTT+ VD  +  A +     + G H     V  + +PR I+++VKAGS VD  I  +   +EKGD +IDGGN  Y++T RR  A+   G+ ++G GVSGGEEGA  GPSLMPGGS +A+  +  I   +AA+  D  PC  +VG  G+G
Sbjct:    5 IGFIGLAVMGENLVLNIERNGFSVAVFNRTTTVVDRFL--AGRAHGKRITGAHSIAELVSLLARPRKIMLMVKAGSAVDAVIDQILPLLEKGDLVIDGGNSHYQDTIRRMHALEAAGIHFIGTGVSGGEEGALRGPSLMPGGSAQAWPLVSPIFCAIAAKADDGTPCCDWVGSDGAG 179          
BLAST of CX046403 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCBP (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gnd PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.076e-37
Identity = 80/182 (43.96%), Postives = 120/182 (65.93%), Query Frame = 3
Query:   72 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 617
            M + +IG+ G+AVMG+NLALN+    + +S++NR+   +D T +      N  L+ F   + FV S+  PR I++++K+G   D TIK+L  Y+ KGD IIDGGN +Y++T +R   + ++G+  +G G SGGE+GA YGPS+MPGG  EAY ++  IL K+A+   +  PCVTY+G  GSG
Sbjct:    1 MAKQQIGVIGMAVMGRNLALNMERNQYTVSIFNRS---LDITEKIILNNPNKNLFPFFSIKDFVLSLIVPRCIVLMIKSGVATDDTIKSLIPYLSKGDIIIDGGNTFYKDTIQRGYELLKIGVNLIGAGFSGGEKGALYGPSIMPGGRQEAYNYVSPILKKIASN-SEGIPCVTYIGPDGSG 178          
BLAST of CX046403 vs. ExPASy Swiss-Prot
Match: 6PGD_CERCA (6-phosphogluconate dehydrogenase, decarboxylating OS=Ceratitis capitata GN=Pgd PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.131e-37
Identity = 84/177 (47.46%), Postives = 114/177 (64.41%), Query Frame = 3
Query:   87 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 617
            I L GLAVMGQNL LN+ +KGF +  YNRT  KV++ ++   +  N+   G    +  V+ ++ PR I++LVKAGS VD  I+ L   +  GD IIDGGN  Y++T RR   +    +LY+G GVSGGEEGAR+GPSLMPGG  EA+  I+ I   + A+  D  PC  +VG+GG+G
Sbjct:    7 IALIGLAVMGQNLVLNMNDKGFVVCAYNRTVEKVNQFLKNEAKGTNV--IGATSLQDMVNKLKLPRKIMLLVKAGSAVDDFIQQLVPLLSPGDVIIDGGNSEYQDTARRCDELRAKKILYVGSGVSGGEEGARHGPSLMPGGHPEAWPLIQPIFQSICAKA-DKEPCCEWVGEGGAG 180          
BLAST of CX046403 vs. ExPASy Swiss-Prot
Match: YQEC_BACSU (Uncharacterized protein yqeC OS=Bacillus subtilis GN=yqeC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = 3
Query:   84 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 617
            +IGL GL  MG N+     ++   +  Y+   + VDE ++    EG   L      + F+  +  PR++ ++V  G  VD  ++ +S  + KGD II+ GN  Y+ + RR   + E G+ YL  G SGG EGAR+G   M GG  EA++ +E +    A    ++G    Y G+ GSG
Sbjct:    2 KIGLIGLGKMGINIGKQFIDRNHQVVGYDVNQAAVDE-LKAYGAEGTTNL------KEFISLLHPPRILWVMVPHGI-VDAVLRDVSPLLSKGDMIIEAGNSHYKESIRRYNQMKEAGIHYLDAGTSGGMEGARHGACFMVGGDHEAWEIVEPLFRDTAV---ENG--YLYAGEAGSG 166          
The following BLAST results are available for this feature:
BLAST of CX046403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_TRYBB2.168e-3846.116-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_TREPA3.698e-3846.336-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BUCBP1.076e-3743.966-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CERCA3.131e-3747.466-phosphogluconate dehydrogenase, decarboxylating ... [more]
YQEC_BACSU4.251e-1833.15Uncharacterized protein yqeC OS=Bacillus subtilis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_7G05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7G05-M9-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046403 ID=CX046403; Name=CX046403; organism=Citrus sinensis; type=EST; length=617bp
CTCAAATTTCCTAAATTCATTTCATTTTCAAGCATTCTTCGCAAGGTTGA
ATTTTTCTCAGGTGACTAAAGATGGTCCAGACAAGAATTGGCCTAGCTGG
CCTTGCTGTCATGGGTCAAAATCTTGCTCTCAACATTGCTGAGAAAGGAT
TCCCAATTTCTGTTTACAATCGGACCACCTCTAAAGTTGACGAGACTGTT
GAACGAGCCAAACAAGAAGGGAATCTGCCCTTATATGGTTTCCATGATCC
TGAATCCTTTGTTCATTCAATCCAGAAACCTCGTGTTATAATCATGCTTG
TAAAAGCTGGTTCTCCTGTTGATCAAACAATTAAAACATTATCTGTTTAT
ATGGAGAAAGGAGATTGTATCATTGATGGTGGTAATGAATGGTATGAGAA
TACTGAGAGGAGACAGAAAGCCGTGGCTGAATTGGGTCTGCTTTATCTGG
GAATGGGAGTTTCAGGTGGTGAAGAGGGTGCTAGGTATGGGCCTTCTTTA
ATGCCTGGAGGTTCCTTTGAGGCCTACAAGCATATAGAAGATATTCTTCT
TAAGGTGGCTGCTCAGGTTCCTGATAGCGGTCCTTGTGTTACTTATGTTG
GTAAAGGAGGATCTGGA
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