CX046329

Overview
NameCX046329
Unique NameCX046329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_CANGA (40S ribosomal protein S28 OS=Candida glabrata GN=RPS28A PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.135e-12
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   76 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 210
            A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DIL
Sbjct:   10 ARVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDIL 54
[Close]
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_SPOFR (40S ribosomal protein S28 OS=Spodoptera frugiperda GN=RpS28 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.494e-11
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            MD     A VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDILT
Sbjct:    1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 53
[Close]
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_PAPDA (40S ribosomal protein S28 OS=Papilio dardanus GN=RpS28 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.494e-11
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            MD     A VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDILT
Sbjct:    1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 53
[Close]
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_BOMMO (40S ribosomal protein S28 OS=Bombyx mori GN=RpS28 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.494e-11
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213
            MD     A VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDILT
Sbjct:    1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 53
The following BLAST results are available for this feature:
BLAST of CX046329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS28_CANGA5.135e-1275.5640S ribosomal protein S28 OS=Candida glabrata GN=R... [more]
RS28_SPOFR1.494e-1164.1540S ribosomal protein S28 OS=Spodoptera frugiperda... [more]
RS28_PAPDA1.494e-1164.1540S ribosomal protein S28 OS=Papilio dardanus GN=R... [more]
RS28_BOMMO1.494e-1164.1540S ribosomal protein S28 OS=Bombyx mori GN=RpS28 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_7C07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-7C07-E13-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046329 ID=CX046329; Name=CX046329; organism=Citrus sinensis; type=EST; length=215bp
GAAATTAGCAGCCGCTTCTGTCACCTTCTCTCTCTTCTCGCCTCTTCGCT
CAGAATGGATTCTCAGATTAAGCACGCTGTGGTGGTGAAAGTCATGGGCC
GCACTGGTTCAAGAGGACAGGTTACTCAAGTGAGAGTCAAGTTTTTAGAT
GATCAGAACCGATTCATCATGAGGAATGTGAAGGGACCCGTTAGAGAAGG
TGATATCCTCACTTT
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