CX046329
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.690e-20 Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1 Query: 55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILT Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILT 53
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.542e-19 Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1 Query: 55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF D +RFIMRNVKGPVREGD+LT Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLT 52
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19 Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1 Query: 55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF D +R+IMRNVKGPVREGDILT Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILT 52
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.216e-14 Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LT Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLT 57
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.216e-14 Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LT Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLT 57
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.165e-14 Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1 Query: 55 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 MD + A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDILT Sbjct: 1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILT 53
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13 Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LT Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13 Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LT Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13 Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LT Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
BLAST of CX046329 vs. ExPASy Swiss-Prot
Match: RS28_HUMAN (40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.596e-13 Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 67 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILT 213 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LT Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57 The following BLAST results are available for this feature:
BLAST of CX046329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046329 ID=CX046329; Name=CX046329; organism=Citrus sinensis; type=EST; length=215bpback to top |