DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHIEC (Threonyl-tRNA synthetase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=thrS PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.920e-53
Identity = 110/233 (47.21%), Postives = 150/233 (64.38%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALT------EALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYRELP+RLA+FG++HR E SGAL GL RVR F QDDAHIFC + Q+  E   + + I   Y  FGF    +KLSTRPEK +G  A W++AEA +T      EA +E      I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF   Y   +  KT+ PVMIHRAI GS+ER   IL+E++ G  P W+SP Q +V  ++  +  Y L+V + +  AG  V+
Sbjct:  358 LKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKTIEAQSEGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSNSEKTQ-PVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATITSEADAYGLEVAEALREAGLNVE 589          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_WOLWR (Threonyl-tRNA synthetase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=thrS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.165e-52
Identity = 102/225 (45.33%), Postives = 142/225 (63.11%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            RSYR+LP+R+A+FG  HRNE+SG+L GL RVR F QDDAHIFC E Q+  E     + +   Y   GF    +K S RP+   GD   W++AE AL EA+ E G  ++++ G+GAFYGPK++  + DA+ R +QC TLQ+DF LP+R    Y   D  K   PVM+HRAILG+ ER   IL+E+Y GK+P WL+P Q  +  ++  +  YA ++ + +   G  V
Sbjct:  344 RSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETIKFCDLLKEVYSELGFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAVKEAGLSYELSPGEGAFYGPKLEFVLKDAIGRSWQCGTLQVDFILPERLGAFYIGADGHK-HHPVMLHRAILGTFERFIGILIENYAGKFPVWLAPTQLAILTITNEADGYATKISNVLKEQGVRV 567          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_STRMK (Threonyl-tRNA synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=thrS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.165e-52
Identity = 104/226 (46.02%), Postives = 142/226 (62.83%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            + SYR+LP+R  +FG  HRNE SGAL G+ RVR F QDD H+FC E+QI+ EV    +     Y+ FGF   ++K++ RPE  LGD ATW+KAE AL  AL   G  WQ   G+GAFYGPKI+  + DA+ R +Q  T+Q+DF +P R    Y  E+  K + PVM+HRAI+GS+ER   IL+EH+ G++P WL+P Q +V  ++     Y   V   +   G+ V
Sbjct:  345 LHSYRDLPIRYGEFGSCHRNEPSGALHGILRVRGFTQDDGHVFCTENQIESEVTAFHQQALAVYQHFGFDEIQIKIALRPESRLGDDATWDKAEGALRSALTACGVEWQELPGEGAFYGPKIEYHLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQK-KHPVMLHRAIVGSMERFLGILIEHHAGQFPAWLAPTQVVVANITDAQADYVSGVTKTLAEQGFRV 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHIME (Threonyl-tRNA synthetase OS=Rhizobium meliloti GN=thrS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.165e-52
Identity = 108/233 (46.35%), Postives = 148/233 (63.52%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQ------INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYRELP+RLA+FG +HR E SGAL GL RVR F QDDAHIFC + Q+  E   + + I   Y  FGF    +KLSTRPEK +G    W++AEA +TE L    +  +      I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF   Y  + E++  +PVMIHRAI GS+ER   ILLE+Y G  P W+SP Q +V  ++  +  Y  +V + +  AG  V+
Sbjct:  353 LKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQTIEEQSEGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFY-IDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLWISPLQVVVATITSEADDYGREVAERLRDAGLTVE 584          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHILW (Threonyl-tRNA synthetase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=thrS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.165e-52
Identity = 110/233 (47.21%), Postives = 150/233 (64.38%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALT------EALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYRELP+RLA+FG++HR E SGAL GL RVR F QDDAHIFC + Q+  E   + + I   Y  FGF    +KLSTRPEK +G  A W++AEA +T      EA +E      I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF   Y   +  KT+ PVMIHRAI GS+ER   IL+E++ G  P W+SP Q +V  ++  +  Y L+V + +  AG  V+
Sbjct:  358 LKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKTIEAQSEGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSNSEKTQ-PVMIHRAICGSMERFLGILIENFAGHLPLWVSPLQVVVATITSEADAYGLEVAEALREAGLNVE 589          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MARMS (Threonyl-tRNA synthetase OS=Marinomonas sp. (strain MWYL1) GN=thrS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.165e-52
Identity = 101/224 (45.09%), Postives = 144/224 (64.29%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            ++SYR+LP R+A+FG  HRNE SGAL G+ RVR F QDD HIF  E QI+ EV   ++ +   Y  FGF     +LSTRPE+ +G    W+KAE AL+EAL+  G  W+   G+GAFYGPKI+ S+ DA+ R +QC T+Q+DF +P R    Y +ED ++ + PVM+HRAI+GS+ER   IL+E  +G +P WL+P Q ++  ++     Y   +   +   G+
Sbjct:  345 LKSYRDLPFRMAEFGSCHRNEPSGALHGIMRVRNFVQDDGHIFVTEGQIQQEVSEFIDLLHEVYADFGFDNIVYRLSTRPEQRVGSDEVWDKAEKALSEALDSAGLDWEELPGEGAFYGPKIEFSLKDAIGRVWQCGTIQVDFSMPTRLGAQYVSEDGSR-QTPVMLHRAIVGSLERFIGILIEDTEGAFPVWLAPEQVVIMNITDRQADYCSVLEKRLNSNGF 567          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_WOLPM (Threonyl-tRNA synthetase OS=Wolbachia pipientis wMel GN=thrS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 102/225 (45.33%), Postives = 142/225 (63.11%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            RSYR+LP+R+A+FG  HRNE+SG+L GL RVR F QDDAHIFC E Q+  E     + +   Y   GF    +K S RP+   G+   W++AE AL EA+ E G  +++N G+GAFYGPK++  + DA+ R +QC TLQ+DF LP+R    Y   D  K   PVM+HRAILG+ ER   IL+E+Y GK+P WL+P Q  +  ++  +  YA ++ + +   G  V
Sbjct:  344 RSYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETIKFCDLLKEVYSELGFNEISVKFSDRPDIRAGNDEVWDRAEKALLEAVKEAGLSYKLNPGEGAFYGPKLEFVLKDAIGRNWQCGTLQVDFILPERLGAFYIGADGHK-HHPVMLHRAILGTFERFIGILIENYAGKFPVWLAPTQLAILTITNEADGYATEISNILKEQGVRV 567          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_STRM5 (Threonyl-tRNA synthetase OS=Stenotrophomonas maltophilia (strain R551-3) GN=thrS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 103/226 (45.58%), Postives = 143/226 (63.27%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            + SYR+LP+R  +FG  HRNE SGAL G+ RVR F QDD H+FC E+Q++ EV    +     Y+ FGF   ++K++ RPE  LGD ATW+KAE AL  AL+  G  WQ   G+GAFYGPKI+  + DA+ R +Q  T+Q+DF +P R    Y  E+  K + PVM+HRAI+GS+ER   IL+EH+ G++P WL+P Q +V  ++     Y   V   +   G+ V
Sbjct:  345 LHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCTENQVEAEVTAFHQQALAVYQHFGFDEIQVKIALRPESRLGDDATWDKAEGALRSALSSNGVEWQELPGEGAFYGPKIEYHLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQK-KHPVMLHRAIVGSMERFLGILIEHHAGQFPAWLAPTQVVVANITDAQAEYVSDVTKTLADQGFRV 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHISN (Threonyl-tRNA synthetase OS=Rhizobium sp. (strain NGR234) GN=thrS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 108/233 (46.35%), Postives = 147/233 (63.09%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQ------INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYRELP+R+A+FG +HR E SGAL GL RVR F QDDAHIFC + Q+  E   + + I   Y  FGF    +KLSTRP+K +G  A W++AEA +T+ LN      +      I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF   Y  +D  K  +PVMIHRAI GS+ER   ILLE+Y G  P W+SP Q +V  ++  +  Y  +V   +  AG  V+
Sbjct:  352 LKSYRELPVRMAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGFKEIVVKLSTRPDKRVGSDALWDRAEAVMTDVLNTIEAQSEGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDKDSEK-RQPVMIHRAICGSMERFLGILLENYAGHMPLWISPLQVVVATITSDADDYGREVAARLREAGLTVE 583          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHIE6 (Threonyl-tRNA synthetase OS=Rhizobium etli (strain CIAT 652) GN=thrS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 110/233 (47.21%), Postives = 150/233 (64.38%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALT------EALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYRELP+RLA+FG++HR E SGAL GL RVR F QDDAHIFC + Q+  E   + + I   Y  FGF    +KLSTRPEK +G  A W++AEA +T      EA +E      I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF   Y   +  KT+ PVMIHRAI GS+ER   IL+E++ G  P W+SP Q +V  ++  +  Y L+V + +  AG  V+
Sbjct:  358 LKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKTIEAQSEGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSNSEKTQ-PVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATITSEADAYGLEVAEALRDAGLNVE 589          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_RHIEC8.920e-5347.21Threonyl-tRNA synthetase OS=Rhizobium etli (strain... [more]
SYT_WOLWR1.165e-5245.33Threonyl-tRNA synthetase OS=Wolbachia sp. subsp. D... [more]
SYT_STRMK1.165e-5246.02Threonyl-tRNA synthetase OS=Stenotrophomonas malto... [more]
SYT_RHIME1.165e-5246.35Threonyl-tRNA synthetase OS=Rhizobium meliloti GN=... [more]
SYT_RHILW1.165e-5247.21Threonyl-tRNA synthetase OS=Rhizobium leguminosaru... [more]
SYT_MARMS1.165e-5245.09Threonyl-tRNA synthetase OS=Marinomonas sp. (strai... [more]
SYT_WOLPM1.522e-5245.33Threonyl-tRNA synthetase OS=Wolbachia pipientis wM... [more]
SYT_STRM51.522e-5245.58Threonyl-tRNA synthetase OS=Stenotrophomonas malto... [more]
SYT_RHISN1.522e-5246.35Threonyl-tRNA synthetase OS=Rhizobium sp. (strain ... [more]
SYT_RHIE61.522e-5247.21Threonyl-tRNA synthetase OS=Rhizobium etli (strain... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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