DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MYCS2 (Threonyl-tRNA synthetase OS=Mycobacterium smegmatis GN=thrS PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 107/227 (47.14%), Postives = 143/227 (63.00%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RSYRELPLRL +FG ++R E SG + GLTRVR   QDDAHI+    Q++DE+  +LEF+    + +G   Y L+LST+ PEKY+G    WE+A   L E     G     + G  AFYGPKI + V DAL R +Q +T+QLDF +PDRF L Y+A D ++  RPV+IHRA+ GS+ER F +L EHY G +P WL+P Q +  PV+    PY  +V   +   G  V+
Sbjct:  378 RSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYTTREQMRDELTRLLEFVLSLLKDYGLDDYYLELSTKDPEKYVGSDEIWEEATETLREVAEASGLDLVPDPGGAAFYGPKISVQVKDALGRSWQMSTIQLDFNMPDRFELEYTAADGSR-RRPVLIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVADAHTPYLEEVAAQLKSRGVRVE 603          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_GLOVI (Threonyl-tRNA synthetase OS=Gloeobacter violaceus GN=thrS PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 104/224 (46.43%), Postives = 147/224 (65.62%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF--GFTYELKLSTRP---EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            ++ SYRELP+RLA+FG ++R E SG L GLTRVR F  DD+H+F    Q+ DE + V++ I + +R    G  +  +LS R    +KY+G  A WEKA+AA+ +A  + G  + + EG+ AFYGPK+D    DAL R++Q  T+Q+D+ LP+RF L Y AED ++  RPVMIHRA  GS+ER  AIL+EH+ G +P WL+P Q  + PV+     YA  V+D +
Sbjct:  329 ELHSYRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDDEFKKVVDLIQFVFRSLQLGDGFSARLSFRDPTSDKYIGSDAAWEKAQAAILKASQDLGLKYFVAEGEAAFYGPKLDFIFRDALGREWQLGTVQVDYILPERFELEYVAEDGSR-RRPVMIHRAPFGSLERFIAILIEHFAGDFPLWLAPEQVRILPVTDQFVGYAESVKDRL 551          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_AGRVS (Threonyl-tRNA synthetase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=thrS PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 106/233 (45.49%), Postives = 146/233 (62.66%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGK------PWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYRELP+RLA+FG++HR EASGAL GL RVR F QDDAH+FC E Q+  E   + + I   Y  FGF    +KLSTRPEK +G    W++AE+ +TE L    +         I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF   Y  +   KT+ PVMIHRAI GS+ER   IL+E++ G  P W +P Q +V  ++  +  Y   V + +  AG  V+
Sbjct:  358 LKSYRELPVRLAEFGLVHRYEASGALHGLMRVRGFTQDDAHVFCTEEQMAAECLRINDLILSVYEDFGFKEVVVKLSTRPEKRVGSDELWDRAESVMTEVLKAIEEQSGGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDQHSEKTQ-PVMIHRAICGSMERFLGILIENFAGHMPLWFAPLQVVVATITSEADDYGRDVAEQLRDAGLEVE 589          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_STRAW (Threonyl-tRNA synthetase OS=Streptomyces avermitilis GN=thrS PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 105/227 (46.26%), Postives = 144/227 (63.44%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RSYRELPLRL +FG ++R E SG + GLTR R F QDDAHI+C   ++ DE+   L F+    R +G T + L+LST+ PEK++G    WE+A   L +   + G P   + G  AFYGPKI +   DA+ R +Q +T+QLDF LP+RF+L Y+  D +K +RPVMIHRA+ GS+ER FA+LLEHY G +P WL+P QA+  P+      Y  +      + G  V+
Sbjct:  365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREKMADELDKTLTFVLNLLRDYGLTDFYLELSTKDPEKFVGSDEVWEEATETLRQVAEKQGLPLVPDPGGAAFYGPKISVQAKDAIGRTWQMSTVQLDFNLPERFDLEYTGPDGSK-QRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQAVGIPIGDAHVEYLQKFAAEAKKKGLRVE 590          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MYCTU (Threonyl-tRNA synthetase OS=Mycobacterium tuberculosis GN=thrS PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 110/226 (48.67%), Postives = 142/226 (62.83%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPY----ALQVRDHIYRA 685
            RSYRELPLRL +FG ++R E SG + GLTRVR    DDAHIFC   Q++DE+R +L F+      +G T + L+LST+ PEK++G    WE+A   L E   E G     + G  AFYGPKI + V DAL R +Q +T+QLDF  P+RF L Y+A D  +  RPVMIHRA+ GS+ER F IL EHY G +P WL+P Q +  PV+     Y    A Q++ H  RA
Sbjct:  386 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDELRSLLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPGGAAFYGPKISVQVKDALGRTWQMSTIQLDFNFPERFGLEYTAADGTR-HRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVADEHVAYLEEVATQLKSHGVRA 610          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MYCTA (Threonyl-tRNA synthetase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=thrS PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 110/226 (48.67%), Postives = 142/226 (62.83%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPY----ALQVRDHIYRA 685
            RSYRELPLRL +FG ++R E SG + GLTRVR    DDAHIFC   Q++DE+R +L F+      +G T + L+LST+ PEK++G    WE+A   L E   E G     + G  AFYGPKI + V DAL R +Q +T+QLDF  P+RF L Y+A D  +  RPVMIHRA+ GS+ER F IL EHY G +P WL+P Q +  PV+     Y    A Q++ H  RA
Sbjct:  386 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDELRSLLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPGGAAFYGPKISVQVKDALGRTWQMSTIQLDFNFPERFGLEYTAADGTR-HRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVADEHVAYLEEVATQLKSHGVRA 610          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MYCBT (Threonyl-tRNA synthetase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=thrS PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 110/226 (48.67%), Postives = 142/226 (62.83%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPY----ALQVRDHIYRA 685
            RSYRELPLRL +FG ++R E SG + GLTRVR    DDAHIFC   Q++DE+R +L F+      +G T + L+LST+ PEK++G    WE+A   L E   E G     + G  AFYGPKI + V DAL R +Q +T+QLDF  P+RF L Y+A D  +  RPVMIHRA+ GS+ER F IL EHY G +P WL+P Q +  PV+     Y    A Q++ H  RA
Sbjct:  386 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDELRSLLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPGGAAFYGPKISVQVKDALGRTWQMSTIQLDFNFPERFGLEYTAADGTR-HRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVADEHVAYLEEVATQLKSHGVRA 610          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MYCBP (Threonyl-tRNA synthetase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=thrS PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 110/226 (48.67%), Postives = 142/226 (62.83%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPY----ALQVRDHIYRA 685
            RSYRELPLRL +FG ++R E SG + GLTRVR    DDAHIFC   Q++DE+R +L F+      +G T + L+LST+ PEK++G    WE+A   L E   E G     + G  AFYGPKI + V DAL R +Q +T+QLDF  P+RF L Y+A D  +  RPVMIHRA+ GS+ER F IL EHY G +P WL+P Q +  PV+     Y    A Q++ H  RA
Sbjct:  386 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDELRSLLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPGGAAFYGPKISVQVKDALGRTWQMSTIQLDFNFPERFGLEYTAADGTR-HRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVADEHVAYLEEVATQLKSHGVRA 610          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MYCBO (Threonyl-tRNA synthetase OS=Mycobacterium bovis GN=thrS PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 110/226 (48.67%), Postives = 142/226 (62.83%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPY----ALQVRDHIYRA 685
            RSYRELPLRL +FG ++R E SG + GLTRVR    DDAHIFC   Q++DE+R +L F+      +G T + L+LST+ PEK++G    WE+A   L E   E G     + G  AFYGPKI + V DAL R +Q +T+QLDF  P+RF L Y+A D  +  RPVMIHRA+ GS+ER F IL EHY G +P WL+P Q +  PV+     Y    A Q++ H  RA
Sbjct:  386 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDELRSLLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPGGAAFYGPKISVQVKDALGRTWQMSTIQLDFNFPERFGLEYTAADGTR-HRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVADEHVAYLEEVATQLKSHGVRA 610          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_COREF (Threonyl-tRNA synthetase OS=Corynebacterium efficiens GN=thrS PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 103/224 (45.98%), Postives = 145/224 (64.73%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            RSYRELPLRL +FG ++R E SG + GLTR R F QDDAHI+C E Q+++E+  VLEFI    + +G   + L+LST+ P+K++GD   WE++   L       G     +    AFYGPKI +   DA+ R +Q +T+QLDF LP+RF L Y++ D +K +RP+MIHRA+ GS+ER F +LLEHY G +P WL+P Q +  PV+    P+  +V D +   G+
Sbjct:  390 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEDQLEEELTSVLEFIISLLKDYGLDDFYLELSTKDPKKFVGDDEIWERSTEILQRVATNSGLDLVPDPEGAAFYGPKISVQAKDAIGRTWQMSTVQLDFNLPERFELEYTSPDGSK-QRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVGIPVAEDFIPHLEKVVDKLRARGF 612          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_MYCS22.197e-5147.14Threonyl-tRNA synthetase OS=Mycobacterium smegmati... [more]
SYT_GLOVI2.197e-5146.43Threonyl-tRNA synthetase OS=Gloeobacter violaceus ... [more]
SYT_AGRVS2.197e-5145.49Threonyl-tRNA synthetase OS=Agrobacterium vitis (s... [more]
SYT_STRAW2.870e-5146.26Threonyl-tRNA synthetase OS=Streptomyces avermitil... [more]
SYT_MYCTU2.870e-5148.67Threonyl-tRNA synthetase OS=Mycobacterium tubercul... [more]
SYT_MYCTA2.870e-5148.67Threonyl-tRNA synthetase OS=Mycobacterium tubercul... [more]
SYT_MYCBT2.870e-5148.67Threonyl-tRNA synthetase OS=Mycobacterium bovis (s... [more]
SYT_MYCBP2.870e-5148.67Threonyl-tRNA synthetase OS=Mycobacterium bovis (s... [more]
SYT_MYCBO2.870e-5148.67Threonyl-tRNA synthetase OS=Mycobacterium bovis GN... [more]
SYT_COREF2.870e-5145.98Threonyl-tRNA synthetase OS=Corynebacterium effici... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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