DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_POLSJ (Threonyl-tRNA synthetase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=thrS PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.748e-51
Identity = 102/227 (44.93%), Postives = 143/227 (63.00%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYR+LPLR  +FG  HRNE SG L G+ RVR F QDD HIFC E QI  E       +   Y  FGF   + K++TRP+  +G   +W+KAE AL E+L   G  ++I+ G+GAFYGPKI+ ++ DA+ R++QC T+Q+DF +P+R +  Y  ED A+  RPVM+HRAI+GS+ER   IL+E + G  P WL+P Q  V  ++     YA +V   +   G  V+
Sbjct:  344 IKSYRDLPLRYGEFGQCHRNEPSGGLHGIMRVRGFTQDDGHIFCTEEQILKECVDYTTLLQKVYTDFGFKNIIYKVATRPDARIGSDESWDKAEQALIESLRASGCEFEISPGEGAFYGPKIEYTLKDAIGRQWQCGTMQVDFSMPERLDAEYVGEDGAR-HRPVMLHRAIVGSLERFIGILIEEHAGALPTWLAPIQVSVLNITDSQAEYAREVAKTLQNQGLRVN 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_BARQU (Threonyl-tRNA synthetase OS=Bartonella quintana GN=thrS PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.748e-51
Identity = 104/229 (45.41%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPW------QINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LP+RLA+FGV+HR E SGAL GL RVR F QDDAHIFC + Q+ DE   + + I   Y  FGF    LKLSTRPEK +G  + W+ AE  +   L      +       I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF+  Y  +D  K  +PVMIHRAI GS+ER   IL+E++ G  P WL+P Q +V  ++  +  YA ++   +   G
Sbjct:  354 LKSYRDLPVRLAEFGVVHRYEPSGALHGLMRVRSFTQDDAHIFCTDEQLADECLNINDLILSTYADFGFKEISLKLSTRPEKRVGSDSLWDHAENIMESVLKTIETKFAGQIKTSILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFDAFYIDKDSEK-RQPVMIHRAIFGSMERFLGILIENFAGHMPLWLAPEQVVVAAITSEANEYAKKITARLKAVG 581          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_STRCO (Threonyl-tRNA synthetase OS=Streptomyces coelicolor GN=thrS PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.895e-51
Identity = 108/227 (47.58%), Postives = 141/227 (62.11%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RSYRELPLRL +FG ++R E SG + GLTR R F QDDAHI+C   Q+ +E+   L F+    R +G   + L+LST+ PEK++G    WE+A   L +   +       + G  AFYGPKI +   DA+ R +Q +T+QLDF LP+RF+L Y+A D AKT RPVMIHRA+ GS+ER FA+LLEHY G  P WL+P QA+  PV      Y  +      R G  VD
Sbjct:  365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMSEELDKTLTFVLNLLRDYGLNDFYLELSTKDPEKFVGSDEAWEEATETLRQVAEKQNLELVADPGGAAFYGPKISVQARDAIGRTWQMSTIQLDFNLPERFSLEYTAADGAKT-RPVMIHRALFGSIERFFAVLLEHYAGAMPPWLAPVQAVGIPVGDAHVQYLEEFAAEARRKGLRVD 590          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_POLNA (Threonyl-tRNA synthetase OS=Polaromonas naphthalenivorans (strain CJ2) GN=thrS PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.895e-51
Identity = 102/227 (44.93%), Postives = 142/227 (62.56%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYR+LPLR  +FG  HRNE +G L G+ RVR F QDD HIFC E QI  E       +   Y  FGF   + K++TRPE  +G   +W+KAE AL E+L   G  ++I+ G+GAFYGPKI+ ++ DA+ R++QC T+Q+DF +P+R +  Y  ED A+  RPVM+HRAI+GS+ER   IL+E + G  P WL+P Q  V  ++     YA  V   +   G  V+
Sbjct:  344 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEEQILKECVDYTTLLQKVYTDFGFKNIIYKVATRPEARIGSDESWDKAEHALIESLRASGCEFEISPGEGAFYGPKIEYTLKDAIGRQWQCGTIQVDFSMPERLDAEYVGEDGAR-HRPVMLHRAIVGSLERFIGILIEEHAGALPTWLAPEQVSVLTITDSQAEYARGVAKTLQNQGLRVN 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_BUCBP (Threonyl-tRNA synthetase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=thrS PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.895e-51
Identity = 103/223 (46.19%), Postives = 142/223 (63.68%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            VRSYR+LP+R+++FG  HRNE SGAL GL R+R F QDDAHIFCRE QI  EV   +  +   Y+IFGF   L +LSTRP+  +G+   W+KAE  L  +L E    ++   G+GAFYGPKI++S+ D+L R +QCAT+QLDF LP      Y  +   + + P+++HRA+LGS+ER   IL+E Y G +P WL+P Q ++  V+     Y   +    Y  G
Sbjct:  346 VRSYRDLPIRISEFGSCHRNEPSGALHGLMRIRNFTQDDAHIFCREDQICSEVSNCIRMVYEIYKIFGFKKILVRLSTRPKNRIGNDNIWDKAENDLATSLRESKIEFEYQHGEGAFYGPKIELSLFDSLGRVWQCATIQLDFCLPINLKAFY-IDHNNERKVPIIVHRAVLGSIERFIGILIEEYIGNFPTWLAPIQVVLANVNSNHLQYIKLLYKEFYALG 567          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_BIFA0 (Threonyl-tRNA synthetase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=thrS PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.393e-51
Identity = 104/211 (49.29%), Postives = 138/211 (65.40%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE-KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPY 652
            RSYRELPLRL +FG ++R E SG + GLTRVR   QDD+HI+C   Q+KDE++ +L F+    + +G   + L+LST+ E K++G    WE+A   L E   E G     + G  AFYGPKI +   DA+ R +Q +T+QLDF LP+RF L Y A D    +RPVMIHRA+ GS+ER FAILLEHY G +P WL+P QA+  PV+    P+
Sbjct:  372 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTREQMKDELKNLLNFVLKVLKDYGLNDFYLELSTKDEHKFVGSDEIWEEATNTLAEVAEESGLELVADPGGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAPD-GSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAWLAPVQALGVPVADEFAPH 581          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_METPP (Threonyl-tRNA synthetase OS=Methylibium petroleiphilum (strain PM1) GN=thrS PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.349e-51
Identity = 101/223 (45.29%), Postives = 141/223 (63.23%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LPLR  +FG  HRNE +G L G+ RVR F QDD HIFC E  I  E       +   Y+ FGF   + K++TRPEK +G  A W+KAE AL E+L   G  + ++ GDGAFYGPKI+ ++ DAL R++QC T+Q+DF LP+R +  Y AE   +   PVM+HRAI+GS+ER   IL+E + G  P WL+P Q +V  ++     YA ++   + + G
Sbjct:  344 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEEHILPECVAYTALLQKVYKDFGFNDIIYKVATRPEKRIGSDAVWDKAEHALMESLRASGCEFVVSPGDGAFYGPKIEYTLKDALGRQWQCGTMQVDFSLPERLDAVYVAESGERL-FPVMLHRAIVGSLERFIGILIEQHAGALPAWLAPVQVMVLNITDGQADYAAEIAKTLQKQG 565          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DIAST (Threonyl-tRNA synthetase OS=Diaphorobacter sp. (strain TPSY) GN=thrS PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.349e-51
Identity = 99/222 (44.59%), Postives = 140/222 (63.06%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRA 685
            ++SYR+LPLR  +FG  HRNE +G L G+ RVR F QDD HIFC E  I  E       +   Y+ FGF   + K++TRPE  +G   +W+KAE AL E+L   G  ++I  GDGAFYGPKI+ ++ DA+ R++QC T+Q+DF +P+R +  Y  ED  +  RPVM+HRAI+GS+ER   IL+E + G  P WL+P Q  V  ++   Q Y  ++   + +A
Sbjct:  344 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEDHILAECTAYTALLQKVYKNFGFHNIIYKVATRPEARIGSDESWDKAEHALMESLRASGCEFEIAPGDGAFYGPKIEYTLKDAIGRQWQCGTMQVDFSMPERLDAEYVGEDGGR-HRPVMLHRAIVGSLERFIGILIEEHAGALPVWLAPVQVAVLNITDAQQDYCREIAAKLQKA 564          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_BUCAP (Threonyl-tRNA synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=thrS PE=3 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 8.349e-51
Identity = 98/218 (44.95%), Postives = 142/218 (65.14%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDH 673
            ++SYR+LP+R+A+FG  HRNE+SG+L GL R+R F QDDAHIFC + Q++ E+   ++ I   Y  F F   L K STRP+K +GD + W++AE  L++ L E    ++  EG+GAFYGPKI+  + D+L R +QC T+QLDF LP R    Y  ++    + P++IHRAILGS+ER   IL+E + GK P WLSP Q ++  ++     Y  ++  H
Sbjct:  345 LKSYRDLPIRMAEFGSCHRNESSGSLHGLMRIRNFTQDDAHIFCTQEQLRYEINNCIKMIYDLYSTFNFKKILVKFSTRPKKRIGDESVWDQAEKDLSDVLIENNLKFEHQEGEGAFYGPKIEFVLQDSLDRNWQCGTIQLDFYLPIRLRSFY-IDEHNHQKIPIIIHRAILGSIERFIGILIEEFSGKLPTWLSPIQVVILSITDSHINYVKKIVQH 561          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_AGRRK (Threonyl-tRNA synthetase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=thrS PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.349e-51
Identity = 107/233 (45.92%), Postives = 146/233 (62.66%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGK------PWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYRELP+RLA+FG +HR E SGAL GL RVR F QDDAHIFC + Q+  E   + + I   Y  FGF    +KLSTRPEK +GD A W++AE+ + E L              I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF   Y  +   KT+ PVMIHRAI GS+ER   IL+E++ G  P W+SP Q +V  ++  +  Y  +V + +  AG  V+
Sbjct:  352 LKSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGFEEVVVKLSTRPEKRVGDDALWDRAESVMMEVLKTIEAQSGGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDQHSEKTQ-PVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATITSEADGYGEEVAEALRDAGLTVE 583          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_POLSJ3.748e-5144.93Threonyl-tRNA synthetase OS=Polaromonas sp. (strai... [more]
SYT_BARQU3.748e-5145.41Threonyl-tRNA synthetase OS=Bartonella quintana GN... [more]
SYT_STRCO4.895e-5147.58Threonyl-tRNA synthetase OS=Streptomyces coelicolo... [more]
SYT_POLNA4.895e-5144.93Threonyl-tRNA synthetase OS=Polaromonas naphthalen... [more]
SYT_BUCBP4.895e-5146.19Threonyl-tRNA synthetase OS=Buchnera aphidicola su... [more]
SYT_BIFA06.393e-5149.29Threonyl-tRNA synthetase OS=Bifidobacterium animal... [more]
SYT_METPP8.349e-5145.29Threonyl-tRNA synthetase OS=Methylibium petroleiph... [more]
SYT_DIAST8.349e-5144.59Threonyl-tRNA synthetase OS=Diaphorobacter sp. (st... [more]
SYT_BUCAP8.349e-5144.95Threonyl-tRNA synthetase OS=Buchnera aphidicola su... [more]
SYT_AGRRK8.349e-5145.92Threonyl-tRNA synthetase OS=Agrobacterium radiobac... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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