DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_GEOKA (Threonyl-tRNA synthetase OS=Geobacillus kaustophilus GN=thrS PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.429e-50
Identity = 110/233 (47.21%), Postives = 145/233 (62.23%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTR----PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQ-PYALQVRDHIYRAGYYVD 700
            K+ SYRELP+R+A+ G +HR E SGALTGL RVR    +DAHIF R  QIKDE + V+  I   Y+ FG   Y  +LS R     EKY  D   WEKA+  L EA++E G  +   EG+ AFYGPK+D+ V  AL +    +T+QLDF LP+RF+L Y  ED  K  RPV+IHR ++ ++ER  A L+E YKG +P WL+P Q  V PVS  +   YA  V+  +   G+ V+
Sbjct:  348 KLHSYRELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIFVRPDQIKDEFKRVVNLILEVYKDFGIEEYSFRLSYRDPHDKEKYYDDDEMWEKAQRMLREAMDELGLDYYEAEGEAAFYGPKLDVQVRTALGKDETLSTVQLDFLLPERFDLTYIGED-GKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTWLAPVQVKVIPVSPEAHLDYAYDVQRTLKERGFRVE 579          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_FRASN (Threonyl-tRNA synthetase OS=Frankia sp. (strain EAN1pec) GN=thrS PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.429e-50
Identity = 106/227 (46.70%), Postives = 144/227 (63.44%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPE-KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            RSYRELPLRL +FG ++R E SG + GLTRVR   QDDAH+FC   Q+  E+  VL+F+    R +G   + L+LSTRP  K +G    WE+A   L EA ++      ++EG GAFYGPKI +   DA+ R +Q +T+Q+DFQLP RF++ Y A D  + +RP MIHRA+ G++ER FAILLEHY G  P WL+P Q +  P++    PY   V   + + G  V+
Sbjct:  365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAREQLPTELDTVLKFVLGLLRDYGLEDFYLELSTRPPGKAIGSDKEWEEATELLREAASKQDLELVMDEGGGAFYGPKISVQARDAIGRTWQLSTIQVDFQLPQRFDMTYQAADGTR-QRPFMIHRALFGTIERFFAILLEHYAGALPPWLAPVQVVGIPITDEHVPYLTDVAAKLRQRGIRVE 590          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_VARPS (Threonyl-tRNA synthetase OS=Variovorax paradoxus (strain S110) GN=thrS PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.173e-50
Identity = 105/226 (46.46%), Postives = 137/226 (60.62%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            +RSYR+LPLR  +FG  HRNE SGAL G+ RVR F QDD HIFC E QI +E       +   Y  FGFT  L K++TRP+  +G    W+KAE A+ EAL   G  + I+ GDGAFYGPKI+ ++ DAL R++QC T+Q+DF   +R    Y  E   +   PVM+HRAI+GS+ER   +L+EH+ G  P WL+P Q  V  +S     YA  V   +   G  V
Sbjct:  344 LRSYRDLPLRYGEFGQCHRNEPSGALHGIMRVRGFTQDDGHIFCTEDQILEECVAYTAQLQKVYADFGFTEILYKVATRPDNRVGSDELWDKAEHAVMEALRRSGVDFIISPGDGAFYGPKIEYTLKDALGRQWQCGTMQVDFNTAERLGGEYVTETSGRA-HPVMLHRAIVGSLERFIGMLIEHHAGALPAWLAPVQVAVLNISEGQADYAASVAKTLQNQGLRV 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_LEIXX (Threonyl-tRNA synthetase OS=Leifsonia xyli subsp. xyli GN=thrS PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.173e-50
Identity = 105/211 (49.76%), Postives = 139/211 (65.88%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPY 652
            RSYRELPLRL++FG ++R E SG L+GLTRVR   QDDAHI+  E QI+DE    L+F+    R +G T + L+LST+ PEKY+G   +WE A   L E   E G     + G  AFYGPKI +   DA+ R +Q +T+QLDF  P+ F L Y+A D  + ++P MIHRA+LGS+ER FAILLEH+ G +P WL+P Q +  PV+    P+
Sbjct:  396 RSYRELPLRLSEFGTVYRYEKSGTLSGLTRVRGLTQDDAHIYVTEEQIRDEFARQLQFVLETLRGYGLTDFYLELSTKDPEKYVGSDESWETATETLREVAVESGLELVDDPGGAAFYGPKISVQARDAIGRTWQLSTVQLDFNQPELFELEYNAADGTR-KQPAMIHRALLGSIERFFAILLEHHAGAFPVWLAPTQVVGIPVADAYGPF 605          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_BAUCH (Threonyl-tRNA synthetase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=thrS PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.144e-50
Identity = 102/223 (45.74%), Postives = 138/223 (61.88%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRA 685
            ++ SYR+LPLR+A+FG  +RNE SG+L GL RVR F QDDAHIFC E Q+ DE+   ++ +   Y  FGF   L  LSTRP   +G+   W+KAE  L   L   G  ++ N G GAFYGPKI+ ++ D+  R +QC T+QLDF LP R    Y  ++  +   PVMIHRAILGS+ER   IL+E Y G +P WL+P Q ++  +S     Y +Q+   +  A
Sbjct:  344 QINSYRDLPLRMAEFGSCYRNEPSGSLHGLMRVRNFTQDDAHIFCTEEQVCDEINNNIKMLYEVYHTFGFKKILVNLSTRPAHRIGNDKIWDKAEQDLATTLTNNGILFKYNVGAGAFYGPKIEFTLLDSFDRAWQCGTIQLDFSLPSRLKAFYINKNNQRLV-PVMIHRAILGSLERFIGILIEEYAGFFPTWLAPTQVVLMNISDNQSNYVIQLMQKLSTA 565          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHILO (Threonyl-tRNA synthetase OS=Rhizobium loti GN=thrS PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.412e-50
Identity = 103/229 (44.98%), Postives = 141/229 (61.57%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGK------PWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LP++LA+FG +HR E SGAL GL RVR F QDDAHIFC E Q+  E   + + I   Y  FGF    +KLSTRP+K +G    W+ AEA +   L              IN G+GAFYGPK +  + DA+ R++QC T Q+DF LP+RF   Y   D  K ++PVM+HRAI GS+ER   IL+E+Y G +P W +P+Q +V  ++  +  YA +V   +  AG
Sbjct:  354 LKSYRDLPVKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQLASECLRINDLILSTYADFGFDEISVKLSTRPDKRVGTDEAWDHAEAIMGSVLETIRTRSGNRIKTSINPGEGAFYGPKFEYVLKDAIGREWQCGTTQVDFNLPERFGAFYIGSDSEK-KQPVMVHRAICGSMERFLGILIENYSGHFPLWFAPQQVVVATITSEADGYATEVVAKLKAAG 581          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_LISMO (Threonyl-tRNA synthetase OS=Listeria monocytogenes GN=thrS PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.412e-50
Identity = 107/228 (46.93%), Postives = 147/228 (64.47%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP----EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQ-PYALQVRDHIYRAG 688
            + SYRELP+R+A+ G++HR E SGAL+GL RVR    +DAH+F R  QIKDE + V+E I   Y+ F  T Y  +LS R     EKY  D A WEKA+A L  A++E    +   EG+ AFYGPK+D+ V  A+ ++   +T+QLDF LP+RF+L Y  ED  K  RPV+IHR ++ ++ER  A L+E YKG +P WL+P Q  + PV+  +   YA  V+D + RAG
Sbjct:  345 IHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVYKDFDITDYSFRLSYRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEMDYFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLDFLLPERFDLTYIGEDGEK-HRPVVIHRGVVSTMERFVAYLIEEYKGAFPTWLAPVQMEIIPVNADAHLDYAKGVQDKLQRAG 571          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_ARTAT (Threonyl-tRNA synthetase OS=Arthrobacter aurescens (strain TC1) GN=thrS PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.412e-50
Identity = 106/223 (47.53%), Postives = 138/223 (61.88%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            RSYRELPLRL +FG ++R E SG + GLTRVR   QDDAHI+C   Q+KDE+   L F+    + +G   + L+LST+  EK++GD A WE+A   L+E     G     + G  AFYGPKI +   DAL R +Q +T+QLDF LP+RF L Y A D  + +RPVMIHRA+ GSVER   +L EHY G +P WL+P Q +  PV+     Y   V   +  AG
Sbjct:  377 RSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMKDELTTTLNFVLGLLKDYGLDDFYLELSTKNEEKFVGDDAAWEEATRTLSEVAEASGLHLVPDPGGAAFYGPKISVQAKDALGRTWQMSTIQLDFNLPERFELEYQAADGTR-QRPVMIHRALFGSVERFMGVLTEHYAGAFPAWLAPVQVVGIPVAETFNDYMFDVVGQLKAAG 598          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SULSO (Threonyl-tRNA synthetase OS=Sulfolobus solfataricus GN=thrS PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 106/218 (48.62%), Postives = 144/218 (66.06%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYE-LK--LSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            K R+YR+LP+R ++FG ++R E  G L GL RVR F QDD HIF RE Q+++E++ ++      +  FGF  + +K  LSTRP++ +G    WEKA  AL  AL E G  + I E +GAFYGPKID  + D+L R +Q +T+Q+DF LP+RF L Y  +D  K +RPVM+HRAI GS++R  AILLEH+KGK P WLS  Q  V P++     YA +V
Sbjct:  241 KPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGIK-KRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSVQVRVLPITDEVNEYAEKV 457          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SULIY (Threonyl-tRNA synthetase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=thrS PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 106/218 (48.62%), Postives = 144/218 (66.06%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYE-LK--LSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            K R+YR+LP+R ++FG ++R E  G L GL RVR F QDD HIF RE Q+++E++ ++      +  FGF  + +K  LSTRP++ +G    WEKA  AL  AL E G  + I E +GAFYGPKID  + D+L R +Q +T+Q+DF LP+RF L Y  +D  K +RPVM+HRAI GS++R  AILLEH+KGK P WLS  Q  V P++     YA +V
Sbjct:  241 KPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGIK-KRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSVQVRVLPITDEVNEYAEKV 457          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_GEOKA2.429e-5047.21Threonyl-tRNA synthetase OS=Geobacillus kaustophil... [more]
SYT_FRASN2.429e-5046.70Threonyl-tRNA synthetase OS=Frankia sp. (strain EA... [more]
SYT_VARPS3.173e-5046.46Threonyl-tRNA synthetase OS=Variovorax paradoxus (... [more]
SYT_LEIXX3.173e-5049.76Threonyl-tRNA synthetase OS=Leifsonia xyli subsp. ... [more]
SYT_BAUCH4.144e-5045.74Threonyl-tRNA synthetase OS=Baumannia cicadellinic... [more]
SYT_RHILO5.412e-5044.98Threonyl-tRNA synthetase OS=Rhizobium loti GN=thrS... [more]
SYT_LISMO5.412e-5046.93Threonyl-tRNA synthetase OS=Listeria monocytogenes... [more]
SYT_ARTAT5.412e-5047.53Threonyl-tRNA synthetase OS=Arthrobacter aurescens... [more]
SYT_SULSO7.068e-5048.62Threonyl-tRNA synthetase OS=Sulfolobus solfataricu... [more]
SYT_SULIY7.068e-5048.62Threonyl-tRNA synthetase OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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