DN135265

Overview
NameDN135265
Unique NameDN135265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5402 contig Csv1_Contig5402:35..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN135265 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 57/189 (30.16%), Postives = 93/189 (49.21%), Query Frame = 1 
Query:  157 HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD---KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENE-AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPV-KKLFDARPHVSAWAADITSRPAWAKVLALLKH-*TLCPLPTXR 705
            +K   FL +NP G+VPVLE  +  +FES AI +Y++++  D    G+ L       A +  W +  +L+ D  ++ L W   + P  G     A  EE   + L + L+     L+ + +L   S TL D+  + N+NL   T + KK   A PHV  +   + ++P + KVL   K    + P+PT +
Sbjct:   40 NKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLI----EYAHIEQWIDFSSLEID--ANMLKW---FAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPVPTKK 219
The following BLAST results are available for this feature:
BLAST of DN135265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EF1G2_ARATH8.495e-1230.16Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionwca08g08 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08g08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135265 ID=DN135265; Name=DN135265; organism=Citrus sinensis; type=EST; length=744bp
ACTCACAATAACAAGCGAGGGAAGGAAGACCCAAAGATGGCAGGCATCAA
GGTCCACGGTTCTGTTTTCTCAACTGCTACGCAGCGAGTTTTCGCATCCC
TCTACGAGAAGGAGCTCGAATACGAGCTTGTTCCCGTAGACATGAAGGCT
GGTGAACACAAAAAGGAGGCCTTCCTTTCTTTGAATCCATTCGGTCAAGT
TCCGGTGCTTGAACACGGCGACCAGAAGCTCTTCGAATCAAGGGCAATCA
CCCAATACATCGCCCAGGAGTTTCCAGACAAAGGCACCCAGTTAACATGC
CCAGGCAAGCCCATCGCCCCGTTATTGGTATGGAAGGAGGTGGAGGCACT
CCAGTTCGACCCCCCATCATCGAAGCTCAACTGGGAGCTCGTGTACAAGC
CAATGTTTGGAATGACCACTGATCCAGCTGCGGTTGAAGAAAATGAAGCT
AAGCTTGCCAAAATTTTAGATGTTTACGAGGCCCGTTTGTCTCAGTCCAA
ATACTTGGCGTGCGACAGCTTCACCTTGGTCGATTTGCATCATCTCCCCA
ATATTAATTTGTTGTTGGGGACGCCTGTCAAGAAGCTGTTTGATGCACGC
CCCCATGTTAGCGCATGGGCAGCTGATATCACTTCCAGACCGGCTTGGGC
TAAGGTCCTTGCCTTGCTCAAACACTGAACACTCTGCCCGCTACCTACTN
NNCGTTAGTCGNTNNNCGGTGGTCACTTATCTTTTGTAATACCT
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