DN135187

Overview
NameDN135187
Unique NameDN135187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 58/148 (39.19%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 504
            S  A +R+ ++ + +++D P   SA P+ D++  W A I+GP+D+P+  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:    2 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 504
            S  A +R+ ++ + +++D P   SA P+ D++  W A I+GP+D+P+  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  +++Y     ET  +SW
Sbjct:    2 STPARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.725e-28
Identity = 66/144 (45.83%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   94 RINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPS-DSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 522
            RI KE + L  +P     A P   +  ++   I G S DSPF GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +KT+ A+   TAR+WT+ YAM
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.942e-28
Identity = 58/148 (39.19%), Postives = 92/148 (62.16%), Query Frame = 1
Query:   88 SKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 519
            + R+ +EL  L  +PP   +     D M   +A I+G +++P+  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K ++  +   AR WT+K+A
Sbjct:    4 TSRLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.842e-28
Identity = 59/148 (39.86%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   88 SKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 519
            + R+ +EL  L  +PP   +     D M   +A I+G +++P+  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K ++  +   AR WT+K+A
Sbjct:    4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.560e-28
Identity = 61/145 (42.07%), Postives = 87/145 (60.00%), Query Frame = 1
Query:   88 SKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT--------DRAKYETTAR 498
            SKR+  EL +L   P    SA P  D++F+W  TI G  D+ +    F +S+ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +  +L+SI SLL +PN + PL    A ++          D+   E T+R
Sbjct:    8 SKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.118e-27
Identity = 59/148 (39.86%), Postives = 86/148 (58.11%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE-----TTARSW 504
            S  A +R+ ++ + L  D P   S  P  D++  W A I GP ++PF  G F +++ F   YP KPP V F +K+FHPNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE     T   SW
Sbjct:    2 STAAKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELSW 149          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 1
Query:   88 SKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 519
            + R+ KEL  L  +PP   +     D +   +A I+G +++P+  GVF + +  P  YPF+PP+V F T ++HPNI+S+G ICLDIL    K  W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K ++  +   A+ WT+ +A
Sbjct:    4 ASRLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.548e-27
Identity = 68/157 (43.31%), Postives = 94/157 (59.87%), Query Frame = 1
Query:   88 SKRINKELEDLQKDPPASCS------AGPVADDMFHWQ---ATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 519
            S R+ KEL+ L  DPP   S      A   + D   +    A I GP D+ +A G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK +R  ++  AR  T+KYA
Sbjct:    8 SLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 7.246e-27
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPAS---CSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 519
            + +A +RI +E +++ K    S        V ++    +  I GP D+P+ GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    2 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
The following BLAST results are available for this feature:
BLAST of DN135187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_ASHGO9.146e-3039.19Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_KLULA2.661e-2938.51Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UE2NL_HUMAN1.725e-2845.83Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2T_BOVIN2.942e-2839.19Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2T_HUMAN3.842e-2839.86Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2C_DICDI8.560e-2842.07Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC2_CRYNE1.118e-2739.86Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBE2T_MOUSE1.907e-2739.86Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC37_ARATH5.548e-2743.31Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBE2K_MOUSE7.246e-2740.79Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionwca07e06 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07e06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135187 ID=DN135187; Name=DN135187; organism=Citrus sinensis; type=EST; length=646bp
GAGACTTTTTTTTTGACTCGCAACGTAAAATAACACCAGACCCAAACTCT
CAGGCCACAAAGTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCA
ACAAGGAGTTGGAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCT
GGCCCTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCC
ATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCC
CACCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTT
TTCCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAA
GGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTT
GCTCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATT
GCTCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATC
CTGGACTCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTATGCCCC
TGAGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTT
TGTTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTG
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