DN135180
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.033e-37 Identity = 81/188 (43.09%), Postives = 114/188 (60.64%), Query Frame = 3 Query: 84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647 N ++ N HF+KHW +KTWF+ P I PRP AG LR VV +YN K R GRGF+L+ELKAAGI + A TIG++VD RR N++ EGL++N RLK YKAKL++FP++A K GDS+ EEL A Q++G +P++ E +VT + + + LR ER ++++ G Sbjct: 6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRG 193
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34 Identity = 80/172 (46.51%), Postives = 105/172 (61.05%), Query Frame = 3 Query: 144 FNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647 FN P I PRP AG LRP V QT KYN +LR GRGF+L+ELKAAGI KK A IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++ K GD+ EE+ ATQ++G +P I PEK +T + + K +D+LR R ++R G Sbjct: 2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRLRQARAHKRLAG 169
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.460e-27 Identity = 74/183 (40.44%), Postives = 101/183 (55.19%), Query Frame = 3 Query: 99 NGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647 N HF+KHWQ V+ F+ I PRP LRPVV T+KYN K+RAGRGFTL ELKA GI K A TIG+SVDHRR+N+S E +NV RL+ YK+KLV+F ++ + + +++ V+ P APE + V+V + AY LR+ R +++ G Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQP----APES-GLRAVEVPEQ----TAYRTLRLARNEKKYKG 183
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.548e-27 Identity = 79/188 (42.02%), Postives = 102/188 (54.26%), Query Frame = 3 Query: 84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647 N I HF+KHWQ VK F+ I PRP LRPVV T+KYN K+RAGRGFTL E+KAAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR KA ++ A AT PIA VE V + +S A+ LR+ R ++ G Sbjct: 6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27 Identity = 75/181 (41.44%), Postives = 97/181 (53.59%), Query Frame = 3 Query: 105 HFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647 HF+KHWQ VK FN I PRP LRPVV T+KYN K+RAGRGFT E+KAAG+ A TIG++VDHRR+N++ E + NVQRLK Y++K++VFPR + + L+TA PIA +P VE AY LR+ R +R+ G Sbjct: 13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGKV----PETEQVLSTAAA-----FPIA--QPAVETETRAVQDNGESAYRTLRMARSEKRYKG 181
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27 Identity = 79/188 (42.02%), Postives = 102/188 (54.26%), Query Frame = 3 Query: 84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647 N I HF+KHWQ VK F+ I PRP LRPVV T+KYN K+RAGRGFTL E+KAAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR KA ++ A AT PIA VE V + +S A+ LR+ R ++ G Sbjct: 6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181 The following BLAST results are available for this feature:
BLAST of DN135180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN135180 ID=DN135180; Name=DN135180; organism=Citrus sinensis; type=EST; length=647bpback to top |