DN135116

Overview
NameDN135116
Unique NameDN135116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2589 contig Csv1_Contig2589:434..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135116 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 26/48 (54.17%), Postives = 40/48 (83.33%), Query Frame = 2
Query:  170 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 313
            +++L A+ +PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+Y +TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52          
BLAST of DN135116 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 2
Query:  155 STATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 307
            S   C +I +A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+YAI
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
BLAST of DN135116 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 2
Query:  176 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 313
            I+LA+ILPP+GVFL+ GC A+F+I +LLTILGYIPGII+A+Y I K
Sbjct:   21 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYIILK 66          
BLAST of DN135116 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  143 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 307
            MA      C +IL+A++LPPLGV LK GC   EF ICL+LTILGYIPGIIYA+Y I
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55          
BLAST of DN135116 vs. ExPASy Swiss-Prot
Match: PMP3_CRYNE (Plasma membrane proteolipid 3 OS=Cryptococcus neoformans GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  164 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 313
            TC DI   +LA+ILPPLGVFL+ GC A+  I +LLTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIILK 56          
BLAST of DN135116 vs. ExPASy Swiss-Prot
Match: Y567_PSEAE (UPF0057 membrane protein PA0567 OS=Pseudomonas aeruginosa GN=PA0567 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 2
Query:  170 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 316
            + IL+A++LPPLGVFL+ G    FW+ +LLT+LGYIPGI++AVY I K+
Sbjct:    4 IRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYIIAKR 52          
BLAST of DN135116 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  164 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 307
            TC DI   + AV+LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54          
BLAST of DN135116 vs. ExPASy Swiss-Prot
Match: YCU4_CAEEL (UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans GN=T23F2.4 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  164 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 307
            TC+DI   L A++LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54          
The following BLAST results are available for this feature:
BLAST of DN135116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RC21_ARATH5.842e-1254.17UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
RC22_ARATH1.700e-1159.62UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
PMP3_GIBZE2.220e-1169.57Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
RC23_ARATH2.899e-1164.29UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
PMP3_CRYNE3.787e-1166.04Plasma membrane proteolipid 3 OS=Cryptococcus neof... [more]
Y567_PSEAE4.945e-1159.18UPF0057 membrane protein PA0567 OS=Pseudomonas aer... [more]
YCU3_CAEEL6.459e-1164.71UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]
YCU4_CAEEL8.435e-1164.71UPF0057 membrane protein T23F2.4 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionwca06e03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06e03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135116 ID=DN135116; Name=DN135116; organism=Citrus sinensis; type=EST; length=609bp
GCCGGGGGATAAACANNNATACCAAGTACANNNNANNNNAGCAGTTACTC
AAAACCTTAAACACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTAAAT
TTTATTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGCAGA
TGGAAGCACAGCAACATGCGTAGATATTCTCTTGGCTGTTATCTTGCCTC
CTCTTGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGT
TTGCTCTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTTA
TGCCATCACCAAGAAGTGATCTCTCTTCTCCATCTATTGAGAGATCCCAA
GGGCATCATGTGTTTATGAGATCTTTTATTTACAACCGTTTGATGGACAG
CTCTGATTTGATGTAGCCAGATGGGTTCTGATTCTTAATCAACTGGGGTG
TGCGTGTGTGTGGGAGAGAGCACTTGTTTCGTTTGTTAATCTTTGTCGTT
TTGTTTTCTTTAATTTGTCCTTTTTAATAAATTTTAATTCAATATGTTGA
TGTAAAGTGGAGTATTATTGAGNGTGTAAATTGCCCTGTGAATCATTACA
AGTCCCCCA
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