DN135109

Overview
NameDN135109
Unique NameDN135109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12982 contig Csv1_Contig12982:1..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_NEUCR (40S ribosomal protein S29 OS=Neurospora crassa GN=rps-29 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-16
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H +VWNS PRTYG GSR+CRVC +   +IRKYGL  CRQCFR  A +IGF K+R
Sbjct:    1 MSHESVWNSRPRTYGKGSRSCRVCTHSAGLIRKYGLNICRQCFREKANDIGFTKHR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_MAGGR (40S ribosomal protein S29 OS=Magnaporthe grisea GN=RPS29 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.305e-16
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H +VWNS PRTYG G+R+CRVC +   +IRKYGL  CRQCFR  A +IGFVK+R
Sbjct:    1 MSHDSVWNSRPRTYGKGARSCRVCTHRAGLIRKYGLDICRQCFREKAADIGFVKHR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_ICTPU (40S ribosomal protein S29 OS=Ictalurus punctatus GN=rps29 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH  ++ SHPR +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_HIPCM (40S ribosomal protein S29 OS=Hippocampus comes GN=rps29 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH  ++ SHPR +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_RAT (40S ribosomal protein S29 OS=Rattus norvegicus GN=Rps29 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH  ++ SHPR +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_PONAB (40S ribosomal protein S29 OS=Pongo abelii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH  ++ SHPR +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_MOUSE (40S ribosomal protein S29 OS=Mus musculus GN=Rps29 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH  ++ SHPR +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_LYSTE (40S ribosomal protein S29 OS=Lysiphlebus testaceipes GN=RpS29 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MG  N+W SHPR YG GSR+CR C N H IIRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGFENIWFSHPRKYGQGSRSCRSCANKHGIIRKYGLNICRQCFREYASDIGFKK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_LONON (40S ribosomal protein S29 OS=Lonomia obliqua GN=RpS29 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH+N+W SHPR Y  GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYCQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_HUMAN (40S ribosomal protein S29 OS=Homo sapiens GN=RPS29 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH  ++ SHPR +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
The following BLAST results are available for this feature:
BLAST of DN135109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_NEUCR1.351e-1664.2940S ribosomal protein S29 OS=Neurospora crassa GN=... [more]
RS29_MAGGR2.305e-1664.2940S ribosomal protein S29 OS=Magnaporthe grisea GN... [more]
RS29_ICTPU3.011e-1666.6740S ribosomal protein S29 OS=Ictalurus punctatus G... [more]
RS29_HIPCM3.011e-1666.6740S ribosomal protein S29 OS=Hippocampus comes GN=... [more]
RS29_RAT3.932e-1664.8140S ribosomal protein S29 OS=Rattus norvegicus GN=... [more]
RS29_PONAB3.932e-1664.8140S ribosomal protein S29 OS=Pongo abelii GN=RPS29... [more]
RS29_MOUSE3.932e-1664.8140S ribosomal protein S29 OS=Mus musculus GN=Rps29... [more]
RS29_LYSTE3.932e-1666.6740S ribosomal protein S29 OS=Lysiphlebus testaceip... [more]
RS29_LONON3.932e-1664.8140S ribosomal protein S29 OS=Lonomia obliqua GN=Rp... [more]
RS29_HUMAN3.932e-1664.8140S ribosomal protein S29 OS=Homo sapiens GN=RPS29... [more]

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Properties
Property NameValue
Genbank descriptionwca06d03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06d03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135109 ID=DN135109; Name=DN135109; organism=Citrus sinensis; type=EST; length=486bp
GCCGGGGCCTCAGCAGATTCTATGGGTTTNNNNCAAGCTTAAGCGAACCG
GNNNTTCTCTTTGTCAAGGAAGGAGAAAACAATCAATCATGGGTCACTCC
AACGTTTGGAACTCTCACCCCAGGACTTACGGCCCCGGTTCTCGCGCTTG
CCGGGTTTGTGGGAATCCTCATGCAATAATCAGGAAGTATGGGCTCATGT
GCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAGATTGGTTTTGTTAAG
TACCGCTAAATGATTAACATGTTGTCAACATCAGAAGGGGGGTTACCAGT
ACCATGCTGATTTTGTTTATCTGTGATACCTGTAGCGAATTTCTGTTTCT
CAAGGATTGTTAAGCGATGTTTTGTCTTAAATTGATTCAATGTTTGACAA
AGCAATTGTTGGACTAAGAATATCATTGATCATTCTTATTAAGGTTTAAT
CATTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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