DN135109

Overview
NameDN135109
Unique NameDN135109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_BOVIN (40S ribosomal protein S29 OS=Bos taurus GN=RPS29 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MGH  ++ SHPR +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29A_YEAST (40S ribosomal protein S29-A OS=Saccharomyces cerevisiae GN=RPS29A PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.136e-16
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H NVW SHPR YG GSR CRVC +   +IRKYGL  CRQCFR  A +IGF K+R
Sbjct:    1 MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_CULQU (40S ribosomal protein S29 OS=Culex quinquefasciatus GN=RpS29 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.951e-15
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MG +++W SHPR YG GSR CR C N H +IRKYGL  CRQCFR  AK+IGF K
Sbjct:    1 MGFADLWYSHPRKYGQGSRFCRACSNNHGMIRKYGLNICRQCFREYAKDIGFRK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_DROME (40S ribosomal protein S29 OS=Drosophila melanogaster GN=RpS29 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MG + +W SHPR YG GSR CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGFATLWYSHPRKYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_CANGA (40S ribosomal protein S29 OS=Candida glabrata GN=RPS29 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H NVW SHPR +G GSR CRVC +   +IRKY L  CRQCFR  A +IGF KYR
Sbjct:    1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLIRKYDLNICRQCFRERASDIGFNKYR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29B_YEAST (40S ribosomal protein S29-B OS=Saccharomyces cerevisiae GN=RPS29B PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H NVW SHPR +G GSR CRVC +   ++RKY L  CRQCFR  A +IGF KYR
Sbjct:    1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLVRKYDLNICRQCFREKANDIGFHKYR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_DICDI (40S ribosomal protein S29 OS=Dictyostelium discoideum GN=rps29 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.678e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  104 VWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            +W +HPR +GPGSR CR CGN H IIRKY L  CR+CFR++A+ IGF KYR
Sbjct:    5 LWLTHPRNFGPGSRTCRKCGNHHGIIRKYDLNMCRRCFRTDAEAIGFNKYR 55          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_PIG (40S ribosomal protein S29 OS=Sus scrofa GN=RPS29 PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 250
            MG    + SHPR +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGPQGFYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_DEBHA (40S ribosomal protein S29 OS=Debaryomyces hansenii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.158e-14
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H +VW SHPR +G GSR CRVC +   +IRKY L  CRQCFR  A +IGF K+R
Sbjct:    1 MAHESVWFSHPRNFGKGSRQCRVCSSHSGLIRKYDLNICRQCFRERASDIGFNKFR 56          
BLAST of DN135109 vs. ExPASy Swiss-Prot
Match: RS29_KLULA (40S ribosomal protein S29 OS=Kluyveromyces lactis GN=RPS29 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.386e-13
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 2
Query:   89 MGHSNVWNSHPRTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H NVW SHPR +G GSR CR+ G+   +IRKYGL   RQ FR  A +IGF KYR
Sbjct:    1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR 56          
The following BLAST results are available for this feature:
BLAST of DN135109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_BOVIN3.932e-1664.8140S ribosomal protein S29 OS=Bos taurus GN=RPS29 P... [more]
RS29A_YEAST5.136e-1664.2940S ribosomal protein S29-A OS=Saccharomyces cerev... [more]
RS29_CULQU1.951e-1564.8140S ribosomal protein S29 OS=Culex quinquefasciatu... [more]
RS29_DROME3.329e-1562.9640S ribosomal protein S29 OS=Drosophila melanogast... [more]
RS29_CANGA3.329e-1562.5040S ribosomal protein S29 OS=Candida glabrata GN=R... [more]
RS29B_YEAST4.347e-1560.7140S ribosomal protein S29-B OS=Saccharomyces cerev... [more]
RS29_DICDI5.678e-1564.7140S ribosomal protein S29 OS=Dictyostelium discoid... [more]
RS29_PIG9.685e-1562.9640S ribosomal protein S29 OS=Sus scrofa GN=RPS29 P... [more]
RS29_DEBHA2.158e-1458.9340S ribosomal protein S29 OS=Debaryomyces hansenii... [more]
RS29_KLULA2.386e-1358.9340S ribosomal protein S29 OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionwca06d03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06d03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135109 ID=DN135109; Name=DN135109; organism=Citrus sinensis; type=EST; length=486bp
GCCGGGGCCTCAGCAGATTCTATGGGTTTNNNNCAAGCTTAAGCGAACCG
GNNNTTCTCTTTGTCAAGGAAGGAGAAAACAATCAATCATGGGTCACTCC
AACGTTTGGAACTCTCACCCCAGGACTTACGGCCCCGGTTCTCGCGCTTG
CCGGGTTTGTGGGAATCCTCATGCAATAATCAGGAAGTATGGGCTCATGT
GCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAGATTGGTTTTGTTAAG
TACCGCTAAATGATTAACATGTTGTCAACATCAGAAGGGGGGTTACCAGT
ACCATGCTGATTTTGTTTATCTGTGATACCTGTAGCGAATTTCTGTTTCT
CAAGGATTGTTAAGCGATGTTTTGTCTTAAATTGATTCAATGTTTGACAA
AGCAATTGTTGGACTAAGAATATCATTGATCATTCTTATTAAGGTTTAAT
CATTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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