DN135077

Overview
NameDN135077
Unique NameDN135077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   66 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+  +Q Q   FL+ +P
Sbjct:   53 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 112          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   66 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+  +Q Q   FL+ +P
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 168          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.624e-17
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:   66 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            Y D RYWTMWKLPMFGC D SQ+L EIQ C KA+P+AYIR + F+  +Q Q   FL+ +P
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 168          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:   66 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            Y D RYWTMWKLPMFGC D SQ+L+EIQ C  A+P+AYIR + F+  +Q Q   FL+ +P
Sbjct:  110 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRP 169          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:   66 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            Y D RYWTMWKLPMFGC D SQ+L+EIQ C  A+P+AYIR + F+  +Q Q   FL+ +P
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRP 168          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 3
Query:   33 YVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            YV  +N+   G     Y D RYWTMWKLPMFGC D SQ+L EI  C KA+P+AYIR + F+  +Q Q   FL+ +P
Sbjct:   86 YVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   66 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            Y D RYWTMWKLPMFGC D SQ+L+++Q C KA+P+AYIR + F+  +Q Q   FL+ +P
Sbjct:  110 YQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRP 169          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 3
Query:   81 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            YWTMWKLP+F    + ++L E++EC+  YPN YIR + F+N KQ Q +SF++ KP
Sbjct:   52 YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.206e-12
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 3
Query:   81 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            YWT+WKLP+FG   S ++L E+Q C+  YP  YIR + F+N KQ Q +SF++ KP
Sbjct:   52 YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of DN135077 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 3
Query:   30 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 245
            GY         G  +   WT+WKLP+FG     ++L+EIQ CK+ +PNAYIR +AF++ +Q Q + FL+ KP
Sbjct:   34 GYSPAIEFSFTGKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
The following BLAST results are available for this feature:
BLAST of DN135077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS1_ACECL2.774e-1760.00Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS1_ACEAT2.774e-1760.00Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_ACECL3.624e-1760.00Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_ACEAT1.054e-1658.33Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT1.054e-1658.33Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_BATOE1.377e-1651.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_ACECL1.377e-1656.67Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS_PROHO5.415e-1350.91Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_ANASP1.206e-1250.91Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_CYAPA1.575e-1243.06Ribulose bisphosphate carboxylase small chain OS=C... [more]

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Properties
Property NameValue
Genbank descriptionwca05h02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135077 ID=DN135077; Name=DN135077; organism=Citrus sinensis; type=EST; length=490bp
GGGATCCCTTGCCTTGAATTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGCCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCTA
TAATGCAGCTTGTTTGATTATGGAGATGCTTTTCGTTTTAAATAATAAAG
ACTTGATCATAATCTGTGTGACATCATGTGATTAGCACACAGTTTAAAGG
TTCTTCTTTCGGCGCAGCTGGTTGGAAACACCAGACGTTTTATTATAACT
TTTCTTGTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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