DN135055

Overview
NameDN135055
Unique NameDN135055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.564e-32
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            +S+YDFTVKD  GKDV LS +KGKVL+IVNVAS+CGLT SNY++++ LY+KYK QG EILAFPCNQFGGQEPG+  +I++  CTRFKAE+
Sbjct:    9 QSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEY 98          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.564e-32
Identity = 64/90 (71.11%), Postives = 76/90 (84.44%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  EI+   CTRFKAE+
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEY 98          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.374e-32
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++++ +Y+KYK QG EILAFPCNQFGGQEPGS  EI+   CTRFKAE+
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEY 98          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.374e-32
Identity = 63/92 (68.48%), Postives = 78/92 (84.78%), Query Frame = 1
Query:  289 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            ++K+LYDFTVKD  G DV LS +KGKV+LIVNVAS+CGLT ++Y EL+ +Y KYK +GFEILAFPCNQFG QEPG+N EI +F CT+FK+EF
Sbjct:    5 SKKTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEF 96          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.316e-31
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  277 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            +++ +EKS++ FTVKD  GK+V LS ++GKVLL+VNVAS+CG T SNY++L+ LY KYK QGF +LAFPCNQF  QEPG++ E  +FACTRFKAE+
Sbjct:    6 SSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEY 101          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.316e-31
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-IKEFACTRFKAEF 564
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  E I+   CTRFKAE+
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEY 99          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.912e-29
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  277 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            + +  E+S++ FTVKD  GKD+ +S ++GKVLLIVNVAS+CG T +NY++L+ LY KYK Q FEILAFPCNQF  QEPG++ E  EFAC RFKAE+
Sbjct:    4 SASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEY 99          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.247e-28
Identity = 54/90 (60.00%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            +S+Y+ +++D  G ++ LS++K KVLLIVNVAS+CG+T SNY+EL+ LY +YK +G EILAFPCNQFG +EPG+N +I +F CTRFK+EF
Sbjct:    7 ESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEF 96          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.479e-24
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 561
            S+YDF VK+ +G DV LS +KGKVL+IVNVAS+CGLT  NY++L  L + YK  G E+LAFPCNQF GQEP    +I+ F   +FK E
Sbjct:    3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFE 90          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.847e-23
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 561
            S++  TVK+  G+D PLS ++GKVL+IVNVAS+CGLT SNY++   L + YK  G E+LAFPCNQFGGQEP    +I  F   +FK E
Sbjct:    3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFE 90          
The following BLAST results are available for this feature:
BLAST of DN135055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
GPX4_SOLLC2.564e-3270.00Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY2.564e-3271.11Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC4.374e-3270.00Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_HELAN4.374e-3268.48Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX5_ARATH6.316e-3162.50Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX4_GOSHI6.316e-3170.33Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_ARATH5.912e-2961.46Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX8_ARATH2.247e-2860.00Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX1_CAEEL7.479e-2457.95Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]
GPX2_CAEEL4.847e-2355.68Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionwca05e09 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05e09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135055 ID=DN135055; Name=DN135055; organism=Citrus sinensis; type=EST; length=565bp
GGGGTACTACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCTTA
TTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACAC
AAAACAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGG
ACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTT
TCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCG
TGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCT
TTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAG
CAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTG
GCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTAC
AAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGG
GCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGT
TTAAGGCAGAATTTC
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