DN135055

Overview
NameDN135055
Unique NameDN135055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13571 contig Csv1_Contig13571:49..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.926e-21
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            S+Y+FTVKDI+G DV L K++G V LIVNVA + G T  NY +L  ++ +   +G  ILAFPCNQFGGQEP +  EIK+F   ++  +F
Sbjct:   10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKUGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQF 98          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX1_SCHPO (Glutathione peroxidase OS=Schizosaccharomyces pombe GN=gpx1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  304 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            YD   KD DG   P S  KGKV+L+VN AS+CG TP  Y  L  LY+KYK +GF IL FPCNQFG QEPGS+ EI +F    +   F
Sbjct:    5 YDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTPQ-YKGLEALYQKYKDRGFIILGFPCNQFGNQEPGSDEEIAQFCQKNYGVTF 90          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.320e-20
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 540
            +S+++F+ KDIDG+ V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA
Sbjct:   39 RSMHEFSAKDIDGRMVNLDKYRGHVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA 120          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPO_SYNY3 (Putative glutathione peroxidase OS=Synechocystis sp. (strain PCC 6803) GN=slr1171 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.252e-20
Identity = 48/95 (50.53%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  280 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            TA    ++Y F+   +DG  V L  F+GKVLLIVN AS+CG TP  Y  L  LY ++  +GF +L FPCNQFG QEPG + EIK F  TR+   F
Sbjct:    2 TAQANNTIYGFSANALDGSPVALRDFEGKVLLIVNTASQCGFTPQ-YQGLQALYNRFGDRGFTVLGFPCNQFGQQEPGGSGEIKNFCETRYGVTF 95          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.941e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 540
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA
Sbjct:   39 RSMHEFSAKDIDGHTVNLDKYRGFVCIVTNVASQUGKTQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA 120          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX2_YEAST (Glutathione peroxidase 2 OS=Saccharomyces cerevisiae GN=GPX2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.941e-20
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 564
            S YD   KD  G+     + KGKV+LIVNVAS+CG TP  Y EL  LY+KY+ +GF IL FPCNQFG QEPGS+ +I EF    +   F
Sbjct:    4 SFYDLECKDKKGESFKFDQLKGKVVLIVNVASKCGFTPQ-YKELEELYKKYQDKGFVILGFPCNQFGKQEPGSDEQITEFCQLNYGVTF 91          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.016e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 540
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA 120          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.016e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 540
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA 120          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX42_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Mus musculus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 6.552e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 540
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA
Sbjct:   95 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA 176          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX41_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Mus musculus GN=Gpx4 PE=1 SV=4)

HSP 1 Score: 97.0561 bits (240), Expect = 6.552e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  295 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 540
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA
Sbjct:   39 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA 120          
The following BLAST results are available for this feature:
BLAST of DN135055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
GPX1_SCHMA5.926e-2151.69Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPX1_SCHPO1.011e-2055.17Glutathione peroxidase OS=Schizosaccharomyces pomb... [more]
GPX4_BOVIN1.320e-2056.10Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPO_SYNY32.252e-2050.53Putative glutathione peroxidase OS=Synechocystis s... [more]
GPX4_CALJA2.941e-2056.10Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX2_YEAST2.941e-2053.93Glutathione peroxidase 2 OS=Saccharomyces cerevisi... [more]
GPX4_PONPY5.016e-2056.10Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN5.016e-2056.10Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX42_MOUSE6.552e-2056.10Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_MOUSE6.552e-2056.10Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionwca05e09 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05e09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135055 ID=DN135055; Name=DN135055; organism=Citrus sinensis; type=EST; length=565bp
GGGGTACTACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCTTA
TTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACAC
AAAACAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGG
ACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTT
TCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCG
TGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCT
TTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAG
CAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTG
GCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTAC
AAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGG
GCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGT
TTAAGGCAGAATTTC
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