DN135055

Overview
NameDN135055
Unique NameDN135055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            ++YD+    ++  + VP  ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI
Sbjct:   39 TIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEI 115          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  280 TAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            +AA + ++Y F+ + + G + V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI
Sbjct:    7 SAAAQSTVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEI 90          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX5_PIG (Epididymal secretory glutathione peroxidase OS=Sus scrofa GN=GPX5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            ++YD+    ++G + +   ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI
Sbjct:   37 TIYDYDAFTLNGNEHIQFKQYAGKHVLFVNVATYCGLT-AQYPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEI 113          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-DQYLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEI 115          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX3_PONPY (Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEI 115          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEI 115          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX3_HUMAN (Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEI 115          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  280 TAATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            +A  + ++Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI
Sbjct:    7 SAVAQSTVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTTRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEI 90          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  289 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            T +++YDF V  +DG +  L++++GKVLL+VNVA+ C  T   Y++ + + E       +ILAFPCNQF  QEP  N E+
Sbjct:   36 TSQTIYDFHVPTLDGSEKSLAEYRGKVLLLVNVATYCAYT-FQYNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHEL 114          
BLAST of DN135055 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  298 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 528
            ++Y++    IDG++  P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G ++L FPCNQFG QEPG N EI
Sbjct:   39 TIYEYGALTIDGEEYTPFKQYIGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEI 115          
The following BLAST results are available for this feature:
BLAST of DN135055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
GPX5_MACFA1.323e-1247.44Epididymal secretory glutathione peroxidase OS=Mac... [more]
GPX1_MOUSE1.323e-1244.05Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]
GPX5_PIG2.257e-1246.15Epididymal secretory glutathione peroxidase OS=Sus... [more]
GPX3_RAT2.257e-1248.72Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]
GPX3_PONPY2.257e-1248.72Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3... [more]
GPX3_HYLLA2.257e-1248.72Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPX3_HUMAN2.257e-1248.72Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 P... [more]
GPX1_RAT2.257e-1242.86Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPXC_DIRIM2.948e-1243.75Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX3_CEBAP5.028e-1247.44Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]

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Properties
Property NameValue
Genbank descriptionwca05e09 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05e09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135055 ID=DN135055; Name=DN135055; organism=Citrus sinensis; type=EST; length=565bp
GGGGTACTACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCTTA
TTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACAC
AAAACAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGG
ACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTT
TCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCG
TGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCT
TTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAG
CAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTG
GCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTAC
AAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGG
GCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGT
TTAAGGCAGAATTTC
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