DN134952

Overview
NameDN134952
Unique NameDN134952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10142 contig Csv1_Contig10142:444..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.237e-27
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 282
            LYVGFV+S+Q NN L AKVL+ GDVFVFP G+IHFQ N+GK  A A++ L+SQ  G +TIA+TVFG+NP I P+ L +AFQLD  +VK+LQ KF
Sbjct:  126 LYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.533e-27
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 282
            L VGFVTS+Q NN L +KVL  GDVFVFP G+IHFQ N+G+TNA A++ L SQ PG +TIAD VFG+ PSI P+ L KAFQLD  +VK L+ +F
Sbjct:  128 LLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNVVKYLEARF 221          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.965e-25
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 282
            L VGF++S+Q  N L AK LN GDVFVFP+GLIHFQFN+G T A A +AL+SQ  G +TIA+T+FG+ P +DP+ L +AFQ+D   V++LQ +F
Sbjct:  129 LLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAFQMDVNAVRNLQARF 222          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.764e-25
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 282
            LYVGFVTS+   N L  KV+NKGDVFVFP+GL+HFQFN G T+A A  AL+SQ PG +T+A+ VFG+ PSI  D L KAFQ++  +V  +Q KF
Sbjct:  131 LYVGFVTSNP-ENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAKAFQVEKTVVDQIQAKF 223          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.834e-25
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 282
            L+VGF +S    N L  K LNKGDVFVFP+GLIHFQ NIGK  A A+++L+SQ PG + I +T+FG+ P IDP+ L KAFQLDPK++  LQ KF
Sbjct:  130 LFVGFFSSFP-ENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLAKAFQLDPKVIIQLQKKF 222          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.507e-24
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 282
            LYVGFV S+   N L  KVLNKGDVFVFPQGL+HFQFN G  NA A +AL+SQ PG +T+ + VFG+ PSI  D L KAFQ+D  I+  +Q +F
Sbjct:  131 LYVGFVISNP-ENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQVDKNIIDRIQAQF 223          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.968e-24
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 282
            LYVGFVTS+   N L  KVLNKGDVFVFPQGLIHFQFN G  +  A +AL+SQ PG +TIA+ VFG+ P I  D L KAFQ++ KIV  +Q +F
Sbjct:  124 LYVGFVTSNP-ENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQAQF 216          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24
Identity = 62/101 (61.39%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 LYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 294
            LYVGFVTS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG+NP I  D L KAFQ+D K V  LQ +F   N
Sbjct:  127 LYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.726e-24
Identity = 62/101 (61.39%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 LYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 294
            LYVGFVTS+Q N  N L  K LNKGDVFVFP+GLIHFQFN      AAA  AL+SQ PG +TIA+ VFG+NP I  D L KAFQ+D K V  LQ +F   N
Sbjct:  127 LYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of DN134952 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.666e-23
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 282
            L VGFV+S+Q NN L  KVL +GDVFVFP GLIHFQ N+ +T A A++   SQ PG + IAD VFG+NPSI  + L KAFQLD K+V+ L   F
Sbjct:  129 LLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVF 222          
The following BLAST results are available for this feature:
BLAST of DN134952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
GL118_ARATH4.237e-2762.77Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL17_ARATH5.533e-2762.77Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL18_ARATH3.965e-2557.45Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL23_ORYSJ6.764e-2559.57Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL112_ARATH8.834e-2559.57Putative germin-like protein subfamily 1 member 12... [more]
GL22_ORYSJ1.507e-2459.57Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GL21_ORYSJ1.968e-2461.70Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL121_ORYSJ3.357e-2461.39Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL123_ORYSJ5.726e-2461.39Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL16_ARATH1.666e-2358.51Germin-like protein subfamily 1 member 6 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionwca03g11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03g11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134952 ID=DN134952; Name=DN134952; organism=Citrus sinensis; type=EST; length=565bp
CTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATCGC
AAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTC
ACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCTA
AACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAGC
CAATCCTTCAATCGATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGACC
CAAAGATAGTGAAAGACCTTCAAAATAAGTTCATTAATGGCAATTAGGAG
AAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGTGGCTGTAT
TACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGTCT
CTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAATTG
TTATTGTTTTTATTTAGCAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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